hallamlab / FragGeneScanPlusLinks
Scalable high-throughput short-read open reading frame prediction
☆12Updated 8 years ago
Alternatives and similar repositories for FragGeneScanPlus
Users that are interested in FragGeneScanPlus are comparing it to the libraries listed below
Sorting:
- transposable element typing pipeline☆18Updated last year
- ☆10Updated 3 years ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆19Updated this week
- a versatile toolkit for processing and analyzing diverse types of sequence data☆21Updated 8 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 9 months ago
- ☆20Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated last year
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 7 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Better Alignments with Translated HMMER☆21Updated 3 weeks ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- De novo VIral Genome Annotator☆23Updated 11 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 3 months ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 4 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- PAGAN2 multiple sequence aligner☆12Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆10Updated 2 years ago
- Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.☆11Updated 3 years ago
- PanGenomePipeline☆16Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- ☆19Updated last year
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Variant call verification☆16Updated 2 months ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- software to identify primers that can distinguish genomes☆21Updated 6 months ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago