hallamlab / FragGeneScanPlusLinks
Scalable high-throughput short-read open reading frame prediction
☆12Updated 8 years ago
Alternatives and similar repositories for FragGeneScanPlus
Users that are interested in FragGeneScanPlus are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Variant call verification☆16Updated 7 months ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated last year
- Rapid discovery of reciprocal best blast pairs.☆10Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Updated 2 years ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆20Updated 3 weeks ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Updated 3 months ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12Updated 8 years ago
- profile the repeat landscape in a genome☆16Updated 11 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 3 months ago
- ☆11Updated 4 years ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Implementation of ToL genome assembly workflows☆24Updated last week
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Updated 2 years ago
- Find Unique genomic Regions☆32Updated 2 months ago
- finding conserved regions in highly diverse genomes☆15Updated 7 months ago
- Read contamination removal☆25Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- Reference genome quality scores☆21Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago