Alternatives and similar repositories for FragGeneScanPlus

Users that are interested in FragGeneScanPlus are comparing it to the libraries listed below

• uio-bmi / NucBreak
  Location of structural errors in a genome assembly and structural variations between a pair of genomes
  ☆11Updated 5 years ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆21Updated last week
• Gaius-Augustus / GUSHR
  Generating UTRs from SHort Reads
  ☆12Updated 4 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 3 months ago
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆21Updated 8 months ago
• kevsilva / StrainFLAIR
  Strain-level abundances estimation in metagenomic samples using variation graphs
  ☆25Updated 2 years ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆19Updated last year
• SR-Martin / alvis
  ☆20Updated last year
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• quwubin / paired-kmers
  finding conserved regions in highly diverse genomes
  ☆15Updated 3 months ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 4 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated 11 months ago
• schellt / backmap
  Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
  ☆12Updated 3 years ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 9 months ago
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆24Updated 3 weeks ago
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated last week
• piyuranjan / SNIKT
  Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…
  ☆17Updated 2 years ago
• wf8 / homologizer
  Homologizer: phasing gene copies into polyploid subgenomes
  ☆10Updated 3 years ago
• ThomasDOtto / ILRA
  Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…
  ☆13Updated 9 months ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 3 months ago
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• chg60 / phammseqs
  Assort phage protein sequences into phamilies using MMseqs2
  ☆10Updated 8 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 7 months ago
• caballero / RepeatLandscape
  profile the repeat landscape in a genome
  ☆16Updated 10 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 2 months ago
• pg-space / panspace
  Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes
  ☆11Updated last month
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 8 months ago