slimsuite / diploidocusLinks
Diploid genome assembly analysis tools
☆14Updated 11 months ago
Alternatives and similar repositories for diploidocus
Users that are interested in diploidocus are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆31Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 11 months ago
- ☆12Updated last month
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- ☆16Updated 2 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆26Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 8 months ago
- Domain based annotation of transposable elements☆20Updated 3 months ago
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- ☆11Updated last month
- ☆11Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆14Updated last year
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated 2 months ago
- K-mer based classifier for Y-contig identification from Whole Genome Assemblies☆13Updated 5 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 5 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆14Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Using de-novo assembly and read-phasing to assemble reference-free diploid genomes☆22Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago