Diploid genome assembly analysis tools
☆14Sep 19, 2024Updated 2 years ago
Alternatives and similar repositories for diploidocus
Users that are interested in diploidocus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BUSCOMP: BUSCO Compiler and Comparison tool☆22Sep 19, 2024Updated 2 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 10 months ago
- Chromosome-level synteny plotting using orthologous regions☆33Sep 19, 2024Updated 2 years ago
- Pipelines for the production of Treeval data☆31Updated this week
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing☆45Dec 21, 2021Updated 4 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Yet another Hi-C scaffolding tool☆23Oct 23, 2024Updated last year
- Open source short linear motif discovery and sequence analysis☆29Sep 19, 2024Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 7 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆50Aug 5, 2026Updated last month
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated 2 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Sep 7, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Collection of tools and resources for linked-reads☆13Jun 26, 2026Updated 2 months ago
- This package contains Perl programs/scripts that perform frequently needed operations on FASTA format files.☆16Apr 25, 2025Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆16Apr 22, 2024Updated 2 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 12 years ago
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project☆38Sep 11, 2026Updated last week
- R package for comparison of synteny conservation at the genome-wide scale.☆17Jun 6, 2024Updated 2 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆16Apr 3, 2023Updated 3 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- MCMCtree tutorials☆30May 27, 2024Updated 2 years ago
- This is the site where we store shared code for the Michigan Mycology Lab☆17Apr 10, 2024Updated 2 years ago
- Yet another Hi-C scaffolding tool☆183Nov 4, 2024Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 4 years ago
- FamDB file format library and utilities☆49Jun 1, 2026Updated 3 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Jun 28, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 3 months ago
- Improved long-read assembly by preserving contained reads☆29Aug 22, 2024Updated 2 years ago
- ☆33Jul 9, 2024Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆61Jul 19, 2025Updated last year
- Mapping pipeline for data generated using Arima-HiC☆85May 22, 2024Updated 2 years ago
- ☆14Mar 28, 2018Updated 8 years ago