slimsuite / diploidocus
Diploid genome assembly analysis tools
☆13Updated last month
Related projects ⓘ
Alternatives and complementary repositories for diploidocus
- ☆26Updated 5 months ago
- Instruction and scripts for reconstructing ancestral genome from pairwise syntenic blocks using MLGO☆13Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆39Updated 11 months ago
- Genome Annotation Pipeline☆32Updated 2 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last month
- ☆23Updated 9 months ago
- ☆28Updated 2 years ago
- ☆17Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- A genome assembly assessment pipeline.☆36Updated 11 months ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- Genome alignment and synteny plots☆27Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆33Updated last year
- ☆29Updated 2 months ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆26Updated 5 months ago
- Reconstruction of ancestral genome maps☆16Updated 6 years ago
- Domain based annotation of transposable elements☆19Updated 3 weeks ago
- ContScout sequence contamination filter tool☆15Updated 3 weeks ago
- ☆36Updated last year
- ☆20Updated 3 months ago
- Toolkit for evolutionary analyses of linkage groups☆21Updated 3 months ago
- Centromics: visualing centromeres with multiple omics data☆17Updated 9 months ago
- A box of genomics tools☆21Updated 4 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆13Updated 6 months ago
- ☆28Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆12Updated 4 years ago
- ☆20Updated 8 months ago
- Chromosome-level synteny plotting using orthologous regions☆28Updated last month