slimsuite / diploidocusLinks
Diploid genome assembly analysis tools
☆14Updated last year
Alternatives and similar repositories for diploidocus
Users that are interested in diploidocus are comparing it to the libraries listed below
Sorting:
- Genome alignment and synteny plots☆33Updated 2 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆36Updated 2 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Updated 2 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 10 months ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆10Updated 6 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Updated 6 years ago
- Toolkit for evolutionary analyses of linkage groups☆33Updated last year
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆11Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆30Updated last month
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆14Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- chloroplast genome assembly using long reads data☆13Updated 5 months ago
- Simple tools for working with Hi-C data☆18Updated 7 years ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Updated 2 years ago
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆13Updated 6 years ago
- Reconstruction of ancestral genome maps☆16Updated 7 years ago
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- ☆12Updated 2 years ago
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Updated 8 months ago
- ☆16Updated 2 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Updated 3 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year