phac-nml / mob-suiteLinks
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
☆155Updated 5 months ago
Alternatives and similar repositories for mob-suite
Users that are interested in mob-suite are comparing it to the libraries listed below
Sorting:
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆141Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆229Updated 6 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆190Updated 2 weeks ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- ☆146Updated last year
- DAS Tool☆158Updated last year
- BSR-Based Allele Calling Algorithm☆148Updated 2 weeks ago
- fast phage annotation program☆180Updated this week
- Virus Identification By iteRative ANnoTation☆173Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆252Updated 3 months ago
- Foreign Contamination Screening caller scripts and documentation☆139Updated 6 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆165Updated last week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆206Updated 8 months ago
- geNomad: Identification of mobile genetic elements☆260Updated last month
- a short-read polishing tool for long-read assemblies☆192Updated 2 weeks ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆135Updated 2 years ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆106Updated 4 years ago
- Find endogenous viral elements in genomes☆16Updated 2 weeks ago
- snipit: summarise snps relative to your reference sequence☆162Updated 2 weeks ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆203Updated last month
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 weeks ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆116Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆221Updated this week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆81Updated 5 months ago