MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
☆172Apr 16, 2025Updated 11 months ago
Alternatives and similar repositories for mob-suite
Users that are interested in mob-suite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated last year
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆191Mar 6, 2026Updated 2 weeks ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆91Updated this week
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- Software for prediction of plasmid sequences in metagenomic assemblies☆110Jun 28, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆357Mar 4, 2026Updated 3 weeks ago
- A taxonomic classifier of plasmids☆29Jul 7, 2021Updated 4 years ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆40Oct 23, 2024Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆403Mar 18, 2026Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆148Jan 9, 2026Updated 2 months ago
- Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasm…☆51Feb 2, 2021Updated 5 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Reorients assembled microbial sequences☆136Aug 21, 2025Updated 7 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆613Feb 18, 2026Updated last month
- Mass screening of contigs for antimicrobial and virulence genes☆481Jan 31, 2026Updated last month
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆86Jan 24, 2026Updated 2 months ago
- ☆136Mar 17, 2026Updated last week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆153Oct 2, 2025Updated 5 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆129Jan 22, 2025Updated last year
- Intra-species bacterial contamination detection☆25Feb 5, 2026Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆125Oct 30, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆105Mar 2, 2026Updated 3 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆257Dec 13, 2025Updated 3 months ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆43Jul 23, 2021Updated 4 years ago
- A flexible pipeline for complete analysis of bacterial genomes☆501Mar 14, 2026Updated last week
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆21Apr 20, 2023Updated 2 years ago
- Prediction of prophages from bacterial genomes☆81Mar 17, 2026Updated last week
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆44Aug 20, 2025Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆635Jul 25, 2024Updated last year
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 3 weeks ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Targeted Detection and Reconstruction of Plasmids☆22May 7, 2024Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆86May 7, 2025Updated 10 months ago
- geNomad: Identification of mobile genetic elements☆296Mar 18, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆341Sep 11, 2025Updated 6 months ago
- An updated pipeline for pangenome investigation☆350Jan 15, 2026Updated 2 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆64Jan 19, 2026Updated 2 months ago
- whole genome MLST analysis☆51Mar 13, 2026Updated last week