Scan contig files against PubMLST typing schemes
☆302Jun 17, 2026Updated 3 months ago
Alternatives and similar repositories for mlst
Users that are interested in mlst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mass screening of contigs for antimicrobial and virulence genes☆512Jul 17, 2026Updated 2 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆268Jun 11, 2026Updated 3 months ago
- Rapid haploid variant calling and core genome alignment☆593Dec 12, 2025Updated 9 months ago
- BSR-Based Allele Calling Algorithm☆151Updated this week
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆224Aug 27, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Rapid prokaryotic genome annotation☆994Jan 6, 2026Updated 8 months ago
- "Reads to report" for public health and clinical microbiology☆145Dec 9, 2025Updated 9 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Aug 31, 2026Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆680Aug 7, 2026Updated last month
- Pairwise SNP distance matrix from a FASTA sequence alignment☆157Dec 31, 2025Updated 8 months ago
- Pan-genome wide association studies☆225May 29, 2024Updated 2 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆208Jun 10, 2026Updated 3 months ago
- Rapid large-scale prokaryote pan genome analysis☆380Nov 3, 2025Updated 10 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆522Aug 5, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Sep 9, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆653Jul 29, 2026Updated last month
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 2 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆130Oct 30, 2023Updated 2 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping☆66Jun 5, 2025Updated last year
- SeqSero2☆41Oct 1, 2025Updated 11 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆184Apr 16, 2025Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆127Jun 2, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Short Read Sequence Typing for Bacterial Pathogens☆150Jun 20, 2021Updated 5 years ago
- ☆28Aug 2, 2023Updated 3 years ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆183Aug 10, 2026Updated last month
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆91Jul 17, 2026Updated 2 months ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- whole genome MLST analysis☆56Jun 17, 2026Updated 3 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆158Sep 2, 2026Updated 2 weeks ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆433Updated this week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A tool for generating consensus long-read assemblies for bacterial genomes☆348Jul 24, 2026Updated last month
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆67Jun 11, 2026Updated 3 months ago
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- Clermont PCR method In-Silico☆27Feb 8, 2024Updated 2 years ago
- The tool for in silico serotyping☆65Updated this week
- Fast genome and metagenome distance estimation using MinHash☆452Sep 19, 2025Updated last year
- ☆148Updated this week