tseemann / mlstLinks
Scan contig files against PubMLST typing schemes
☆253Updated 3 years ago
Alternatives and similar repositories for mlst
Users that are interested in mlst are comparing it to the libraries listed below
Sorting:
- A tool for generating consensus long-read assemblies for bacterial genomes☆335Updated 2 months ago
- quality filtering tool for long reads☆380Updated 2 months ago
- An updated pipeline for pangenome investigation☆329Updated 9 months ago
- Rapid comparison and dereplication of genomes☆320Updated 3 weeks ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆242Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆276Updated last year
- Bacterial ribosomal RNA predictor☆262Updated this week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆358Updated 4 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated last month
- geNomad: Identification of mobile genetic elements☆273Updated 3 weeks ago
- Pan-genome wide association studies☆205Updated last year
- Synteny and Rearrangement Identifier☆428Updated 7 months ago
- Build a partitioned pangenome graph from microbial genomes☆287Updated 2 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆237Updated 8 months ago
- Classifier for metagenomic sequences☆267Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- A tool to circularize genome assemblies☆249Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆162Updated 7 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆397Updated 5 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Updated 5 months ago
- Eukaryotic Genome Annotation Pipeline☆368Updated 5 months ago
- BSR-Based Allele Calling Algorithm☆147Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆332Updated 8 months ago
- ☆220Updated this week
- Assembly and binning of metagenomes☆258Updated this week
- ☆270Updated 5 months ago
- k-mer based assembly evaluation☆333Updated last year
- Rapid large-scale prokaryote pan genome analysis☆362Updated last month
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆295Updated 7 months ago