tseemann / abricate
Mass screening of contigs for antimicrobial and virulence genes
☆385Updated last year
Alternatives and similar repositories for abricate:
Users that are interested in abricate are comparing it to the libraries listed below
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆474Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆412Updated last year
- Scan contig files against PubMLST typing schemes☆210Updated 2 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆299Updated 6 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆326Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆359Updated 4 months ago
- Rapid large-scale prokaryote pan genome analysis☆329Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- Rapid haploid variant calling and core genome alignment☆493Updated 6 months ago
- Eukaryotic Genome Annotation Pipeline☆330Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆326Updated last week
- Rapid comparison and dereplication of genomes☆274Updated last month
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆345Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆321Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆486Updated 11 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆345Updated 2 years ago
- Sequence correction provided by ONT Research☆435Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆374Updated last week
- customizable pipeline to identify viral sequences from (meta)genomic data☆234Updated 2 months ago
- 🌈 Interactive analysis of metagenomics data☆409Updated 4 months ago
- Genome assembly evaluation tool☆416Updated 2 months ago
- Fast genome-wide functional annotation through orthology assignment☆587Updated 8 months ago
- bioBakery tools for meta'omic profiling☆266Updated 3 months ago
- A complete pipeline for metagenomic analysis☆392Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆215Updated 3 years ago
- Fast Whole-Genome Similarity (ANI) Estimation☆386Updated last year
- hybrid assembly pipeline for bacterial genomes☆579Updated 6 months ago
- adapter trimmer for Oxford Nanopore reads☆348Updated 8 months ago
- quality filtering tool for long reads☆310Updated last year
- De novo assembler for single molecule sequencing reads using repeat graphs☆803Updated 5 months ago