Mass screening of contigs for antimicrobial and virulence genes
☆486Apr 3, 2026Updated last week
Alternatives and similar repositories for abricate
Users that are interested in abricate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scan contig files against PubMLST typing schemes☆271Mar 26, 2026Updated 2 weeks ago
- Rapid haploid variant calling and core genome alignment☆576Dec 12, 2025Updated 4 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆258Dec 13, 2025Updated 4 months ago
- Rapid prokaryotic genome annotation☆971Jan 6, 2026Updated 3 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆622Feb 18, 2026Updated last month
- hybrid assembly pipeline for bacterial genomes☆636Jul 25, 2024Updated last year
- Rapid large-scale prokaryote pan genome analysis☆375Nov 3, 2025Updated 5 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆408Mar 26, 2026Updated 2 weeks ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆195Apr 1, 2026Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆342Sep 11, 2025Updated 7 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆92Mar 30, 2026Updated 2 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆216Aug 27, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- "Reads to report" for public health and clinical microbiology☆142Dec 9, 2025Updated 4 months ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆173Apr 16, 2025Updated 11 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆502Apr 8, 2026Updated last week
- BSR-Based Allele Calling Algorithm☆149Mar 13, 2026Updated last month
- An updated pipeline for pangenome investigation☆353Jan 15, 2026Updated 3 months ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆110Jun 28, 2021Updated 4 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆588Updated this week
- geNomad: Identification of mobile genetic elements☆301Mar 29, 2026Updated 2 weeks ago
- Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure☆176Feb 26, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Short Read Sequence Typing for Bacterial Pathogens☆147Jun 20, 2021Updated 4 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆126Oct 30, 2023Updated 2 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆406Mar 2, 2026Updated last month
- SPAdes Genome Assembler☆925Mar 17, 2026Updated 3 weeks ago
- Pan-genome wide association studies☆213May 29, 2024Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆454Dec 16, 2025Updated 4 months ago
- ☆137Mar 26, 2026Updated 2 weeks ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆154Oct 2, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Read alignment statistics for metagenomics☆396Apr 8, 2026Updated last week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆328Mar 30, 2026Updated 2 weeks ago
- whole genome MLST analysis☆51Mar 27, 2026Updated 2 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆297Mar 30, 2026Updated 2 weeks ago
- a short-read polishing tool for long-read assemblies☆212Sep 19, 2025Updated 6 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago