Mass screening of contigs for antimicrobial and virulence genes
☆507Jul 17, 2026Updated 3 weeks ago
Alternatives and similar repositories for abricate
Users that are interested in abricate are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scan contig files against PubMLST typing schemes☆296Jun 17, 2026Updated last month
- Rapid haploid variant calling and core genome alignment☆594Dec 12, 2025Updated 8 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆264Jun 11, 2026Updated 2 months ago
- Rapid prokaryotic genome annotation☆992Jan 6, 2026Updated 7 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆383Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆665Aug 7, 2026Updated last week
- hybrid assembly pipeline for bacterial genomes☆650Jul 29, 2026Updated 2 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 9 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆428May 20, 2026Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆347Jul 24, 2026Updated 3 weeks ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆205Jun 10, 2026Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆102Updated this week
- "Reads to report" for public health and clinical microbiology