ncbi / SKESA
SKESA assembler
☆115Updated 5 months ago
Alternatives and similar repositories for SKESA:
Users that are interested in SKESA are comparing it to the libraries listed below
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆121Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆108Updated last week
- A pipeline for running AMRfinderPlus and collating results into functional classes☆75Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆115Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 10 months ago
- Making whole bacterial genome sequencing data analysis easy☆103Updated 4 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆93Updated 2 years ago
- a short-read polishing tool for long-read assemblies☆155Updated 9 months ago
- A toolbox for comparative genomics.☆101Updated 3 years ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated last week
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated this week
- Read Assembly and Annotation Pipeline Tool☆57Updated 5 months ago
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- Assemble bacterial isolate genomes from Nanopore reads☆122Updated 2 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆142Updated last month
- IS mapping software☆53Updated 3 years ago
- Reorients assembled microbial sequences☆114Updated 3 weeks ago
- WtP: Phage identification via nextflow and docker or singularity☆105Updated last month
- Metagenomic classification of long-read sequencing data☆77Updated last week
- Pairwise SNP distance matrix from a FASTA sequence alignment☆132Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆140Updated 5 months ago
- Massively parallel phylogenetic placement of genetic sequences☆82Updated 2 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆74Updated 6 months ago
- The ARTIC field bioinformatics pipeline☆120Updated 2 weeks ago
- Novelty-inclusive microbial community profiling of shotgun metagenomes☆140Updated this week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆91Updated last year
- Interactive quality assessment of genome assemblies☆97Updated this week
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆64Updated 4 years ago