ncbi / SKESA
SKESA assembler
☆116Updated 6 months ago
Alternatives and similar repositories for SKESA:
Users that are interested in SKESA are comparing it to the libraries listed below
- A pipeline for running AMRfinderPlus and collating results into functional classes☆76Updated 7 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated last month
- Foreign Contamination Screening caller scripts and documentation☆129Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆123Updated this week
- a short-read polishing tool for long-read assemblies☆156Updated 10 months ago
- Making whole bacterial genome sequencing data analysis easy☆105Updated 5 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆96Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 10 months ago
- Reorients assembled microbial sequences☆116Updated 3 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆135Updated last year
- A toolbox for comparative genomics.☆102Updated 3 years ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆97Updated 3 weeks ago
- Assemble bacterial isolate genomes from Nanopore reads☆125Updated 2 months ago
- Create a tree using Mash distances☆162Updated last year
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆57Updated 2 weeks ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆48Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆117Updated last year
- ☆81Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆92Updated last week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆144Updated 4 months ago
- Metagenomic classification of long-read sequencing data☆79Updated last week
- Novelty-inclusive microbial community profiling of shotgun metagenomes☆140Updated last week
- A fast whole-genome aligner based on de Bruijn graphs☆146Updated 2 months ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆36Updated last month
- IS mapping software☆53Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago