SKESA assembler
☆128Oct 11, 2024Updated 2 years ago
Alternatives and similar repositories for SKESA
Users that are interested in SKESA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆56Apr 1, 2025Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆391Aug 19, 2026Updated 2 months ago
- hybrid assembly pipeline for bacterial genomes☆656Jul 29, 2026Updated 3 months ago
- a short-read polishing tool for long-read assemblies☆226Jul 28, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆39Oct 22, 2026Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆350Jul 24, 2026Updated 3 months ago
- SeqSero2☆41Oct 1, 2025Updated last year
- Rapid haploid variant calling and core genome alignment☆596Dec 12, 2025Updated 10 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆391Updated this week
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Create a tree using Mash distances☆196Oct 24, 2023Updated 3 years ago
- BSR-Based Allele Calling Algorithm☆153Oct 8, 2026Updated 3 weeks ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆158Jul 24, 2026Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆691Oct 11, 2026Updated 2 weeks ago
- Fast genome and metagenome distance estimation using MinHash☆456Sep 19, 2025Updated last year
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated last week
- Fast Whole-Genome Similarity (ANI) Estimation☆486Sep 14, 2026Updated last month
- Rapid prokaryotic genome annotation☆998Jan 6, 2026Updated 9 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆67Jun 16, 2025Updated last year
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆226Oct 7, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- SPAdes Genome Assembler☆967Oct 22, 2026Updated last week
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆46Nov 25, 2022Updated 3 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last month
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- An updated pipeline for pangenome investigation☆378Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆525Aug 5, 2026Updated 2 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆130Oct 22, 2026Updated last week
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆31Jul 18, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pairwise SNP distance matrix from a FASTA sequence alignment☆157Dec 31, 2025Updated 10 months ago
- A tool for removing redundant genomes from a set of assemblies☆86Jul 24, 2026Updated 3 months ago
- Split Kmer Analysis☆68May 26, 2022Updated 4 years ago
- De novo genome assembler for long uncorrected reads☆238Nov 15, 2023Updated 2 years ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆251Aug 10, 2025Updated last year
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆92Oct 3, 2026Updated 3 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆954Apr 3, 2026Updated 6 months ago