ncbi / pgapLinks
NCBI Prokaryotic Genome Annotation Pipeline
☆359Updated 3 weeks ago
Alternatives and similar repositories for pgap
Users that are interested in pgap are comparing it to the libraries listed below
Sorting:
- Eukaryotic Genome Annotation Pipeline☆368Updated 5 months ago
- adapter trimmer for Oxford Nanopore reads☆376Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆358Updated 4 months ago
- Rapid large-scale prokaryote pan genome analysis☆362Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆397Updated 5 months ago
- quality filtering tool for long reads☆380Updated 2 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆455Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆437Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆450Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- Sequence correction provided by ONT Research☆487Updated 3 months ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆393Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆335Updated 2 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆441Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆571Updated this week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆295Updated 7 months ago
- Scan contig files against PubMLST typing schemes☆253Updated 3 years ago
- A complete pipeline for metagenomic analysis☆439Updated 3 weeks ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆317Updated 7 months ago
- Genome assembly evaluation tool☆483Updated last year
- Build a partitioned pangenome graph from microbial genomes☆287Updated 2 weeks ago
- Bacterial ribosomal RNA predictor☆262Updated this week
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆451Updated 7 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆543Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆331Updated 8 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆383Updated last week
- Plotting scripts for long read sequencing data☆514Updated 3 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆276Updated last year
- Synteny and Rearrangement Identifier☆428Updated 7 months ago