ncbi / pgapLinks
NCBI Prokaryotic Genome Annotation Pipeline
☆366Updated this week
Alternatives and similar repositories for pgap
Users that are interested in pgap are comparing it to the libraries listed below
Sorting:
- Eukaryotic Genome Annotation Pipeline☆378Updated 2 weeks ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- Rapid large-scale prokaryote pan genome analysis☆368Updated 3 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆365Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆604Updated this week
- Mass screening of contigs for antimicrobial and virulence genes☆472Updated last week
- Genome assembly evaluation tool☆494Updated last year
- Fast Whole-Genome Similarity (ANI) Estimation☆446Updated last month
- Bacterial ribosomal RNA predictor☆279Updated 3 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆456Updated 2 years ago
- adapter trimmer for Oxford Nanopore reads☆380Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆390Updated last month
- A complete pipeline for metagenomic analysis☆441Updated 2 weeks ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆403Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆445Updated 3 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆375Updated 3 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆298Updated 9 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 4 months ago
- Build a partitioned pangenome graph from microbial genomes☆292Updated last month
- Rapid comparison and dereplication of genomes☆326Updated 2 months ago
- quality filtering tool for long reads☆387Updated 4 months ago
- hybrid assembly pipeline for bacterial genomes☆633Updated last year
- customizable pipeline to identify viral sequences from (meta)genomic data☆280Updated last year
- Scan contig files against PubMLST typing schemes☆262Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆456Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆245Updated 4 years ago
- 🌈 Interactive analysis of metagenomics data☆442Updated 4 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆321Updated 9 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆496Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆319Updated this week