ncbi / amr
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
☆275Updated last week
Related projects ⓘ
Alternatives and complementary repositories for amr
- A tool for generating consensus long-read assemblies for bacterial genomes☆308Updated 5 months ago
- Scan contig files against PubMLST typing schemes☆201Updated 2 years ago
- An updated pipeline for pangenome investigation☆269Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆255Updated 2 weeks ago
- Synteny and Rearrangement Identifier☆343Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline☆322Updated 3 months ago
- NCBI Prokaryotic Genome Annotation Pipeline☆314Updated last week
- quality filtering tool for long reads☆291Updated last year
- Rapid comparison and dereplication of genomes☆263Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆321Updated last year
- Build a partitioned pangenome graph from microbial genomes☆242Updated this week
- Classifier for metagenomic sequences☆250Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆452Updated this week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆332Updated 2 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆473Updated 9 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆222Updated last year
- A user-friendly workflow for phylogenomics☆203Updated last month
- A tool to circularize genome assemblies☆233Updated 7 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆214Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆124Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆293Updated 3 months ago
- NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org☆246Updated this week
- Bacterial ribosomal RNA predictor☆226Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆348Updated 2 months ago
- Sequence correction provided by ONT Research☆423Updated last month
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆271Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆178Updated last month
- Finds SNP sites from a multi-FASTA alignment file☆240Updated 3 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆364Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆283Updated 3 weeks ago