B-UMMI / chewBBACALinks
BSR-Based Allele Calling Algorithm
☆148Updated 3 weeks ago
Alternatives and similar repositories for chewBBACA
Users that are interested in chewBBACA are comparing it to the libraries listed below
Sorting:
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 3 months ago
- snipit: summarise snps relative to your reference sequence☆163Updated 2 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆195Updated 3 months ago
- ☆137Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆131Updated 2 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆155Updated last week
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆153Updated last week
- a short-read polishing tool for long-read assemblies☆171Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆191Updated 2 months ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆216Updated 2 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 8 months ago
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆216Updated 3 months ago
- A user-friendly workflow for phylogenomics☆214Updated last week
- DAS Tool☆153Updated last year
- Pan-genome wide association studies☆197Updated last year
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- An updated pipeline for pangenome investigation☆306Updated 4 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 weeks ago
- Convert various sequence formats to FASTA☆136Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆233Updated last week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- ☆212Updated 5 months ago
- fast phage annotation program☆167Updated 3 weeks ago
- Create a tree using Mash distances☆167Updated last year
- Short Read Sequence Typing for Bacterial Pathogens☆135Updated 4 years ago