BSR-Based Allele Calling Algorithm
β149Jun 17, 2026Updated last week
Alternatives and similar repositories for chewBBACA
Users that are interested in chewBBACA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- π»βπ¨ Calculate distance matrix from ChewBBACA cgMLST allele call tablesβ29Jun 12, 2026Updated 2 weeks ago
- Scan contig files against PubMLST typing schemesβ288Jun 17, 2026Updated last week
- The MLST pipeline developed by the PathOGiST research groupβ37Nov 29, 2023Updated 2 years ago
- β141Jun 1, 2026Updated 3 weeks ago
- Mass screening of contigs for antimicrobial and virulence genesβ497Apr 3, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graafβ50May 18, 2026Updated last month
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Clickβ¦β87Dec 15, 2024Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.β122May 29, 2026Updated last month
- An updated pipeline for pangenome investigationβ361Jun 2, 2026Updated 3 weeks ago
- List and download schemes from pubMLST.org and other BIGSDB serversβ10Oct 14, 2024Updated last year
- β‘β οΈ Assemble bacterial isolate genomes from Illumina paired-end readsβ260Jun 11, 2026Updated 2 weeks ago
- Assemble bacterial isolate genomes from Nanopore readsβ134Jan 22, 2025Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.β107Jan 22, 2026Updated 5 months ago
- UPHL's Reference Free Pipelineβ29May 22, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A flexible pipeline for complete analysis of bacterial genomesβ518May 21, 2026Updated last month
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbinsβ221Aug 27, 2025Updated 10 months ago
- Rapid haploid variant calling and core genome alignmentβ587Dec 12, 2025Updated 6 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignmentβ155Dec 31, 2025Updated 5 months ago
- A toolbox for pangenome analysis and threshold evaluation.β101Jul 8, 2022Updated 3 years ago
- hybrid assembly pipeline for bacterial genomesβ643Jul 25, 2024Updated last year
- Bioinformatics tool to find integrons in bacterial genomesβ88May 7, 2025Updated last year
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing dataβ24May 8, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmidsβ655May 15, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pan-genome wide association studiesβ219May 29, 2024Updated 2 years ago
- Intra-species bacterial contamination detectionβ25Apr 13, 2026Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing readsβ36Feb 3, 2021Updated 5 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.β200Jun 10, 2026Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assembliesβ175Apr 16, 2025Updated last year
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and pβ¦β370May 22, 2026Updated last month
- Rapid large-scale prokaryote pan genome analysisβ378Nov 3, 2025Updated 7 months ago
- all methods related to Enterobaseβ44Sep 4, 2024Updated last year
- SeqSero2β40Oct 1, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SISTR (Salmonella In Silico Typing Resource) command-line toolβ35Apr 24, 2025Updated last year
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination searchβ15Dec 14, 2022Updated 3 years ago
- Rapid determination of appropriate reference genomes.β101Jan 22, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomesβ232Apr 27, 2026Updated 2 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenomeβ112Dec 5, 2025Updated 6 months ago
- Pipeline for analysing intergenic regions in bacteriaβ39Oct 25, 2019Updated 6 years ago
- "Reads to report" for public health and clinical microbiologyβ144Dec 9, 2025Updated 6 months ago