BSR-Based Allele Calling Algorithm
☆150Jun 3, 2026Updated this week
Alternatives and similar repositories for chewBBACA
Users that are interested in chewBBACA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Feb 12, 2026Updated 3 months ago
- Scan contig files against PubMLST typing schemes☆285Mar 26, 2026Updated 2 months ago
- The MLST pipeline developed by the PathOGiST research group☆37Nov 29, 2023Updated 2 years ago
- ☆139Jun 1, 2026Updated last week
- Mass screening of contigs for antimicrobial and virulence genes☆496Apr 3, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 3 weeks ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆87Dec 15, 2024Updated last year
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆122May 29, 2026Updated last week
- An updated pipeline for pangenome investigation☆361Updated this week
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆261Dec 13, 2025Updated 5 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆134Jan 22, 2025Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆107Jan 22, 2026Updated 4 months ago
- UPHL's Reference Free Pipeline☆28May 22, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A flexible pipeline for complete analysis of bacterial genomes☆516May 21, 2026Updated 2 weeks ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆220Aug 27, 2025Updated 9 months ago
- Rapid haploid variant calling and core genome alignment☆586Dec 12, 2025Updated 5 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆155Dec 31, 2025Updated 5 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 3 years ago
- hybrid assembly pipeline for bacterial genomes☆643Jul 25, 2024Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated last year
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆24May 8, 2024Updated 2 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆646May 15, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pan-genome wide association studies☆219May 29, 2024Updated 2 years ago
- Intra-species bacterial contamination detection☆25Apr 13, 2026Updated last month
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆200Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆175Apr 16, 2025Updated last year
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆370May 22, 2026Updated 2 weeks ago
- Rapid large-scale prokaryote pan genome analysis☆379Nov 3, 2025Updated 7 months ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- SeqSero2☆40Oct 1, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆35Apr 24, 2025Updated last year
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆232Apr 27, 2026Updated last month
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆109Dec 5, 2025Updated 6 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- "Reads to report" for public health and clinical microbiology☆144Dec 9, 2025Updated 5 months ago