BSR-Based Allele Calling Algorithm
☆149Apr 17, 2026Updated this week
Alternatives and similar repositories for chewBBACA
Users that are interested in chewBBACA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables☆29Feb 12, 2026Updated 2 months ago
- Scan contig files against PubMLST typing schemes☆274Mar 26, 2026Updated 3 weeks ago
- The MLST pipeline developed by the PathOGiST research group☆37Nov 29, 2023Updated 2 years ago
- ☆137Updated this week
- Mass screening of contigs for antimicrobial and virulence genes☆488Apr 3, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Apr 16, 2024Updated 2 years ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆87Dec 15, 2024Updated last year
- An updated pipeline for pangenome investigation☆354Jan 15, 2026Updated 3 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- List and download schemes from pubMLST.org and other BIGSDB servers☆10Oct 14, 2024Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆259Dec 13, 2025Updated 4 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆130Jan 22, 2025Updated last year
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- UPHL's Reference Free Pipeline☆28Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A flexible pipeline for complete analysis of bacterial genomes☆502Updated this week
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆216Aug 27, 2025Updated 7 months ago
- Rapid haploid variant calling and core genome alignment☆579Dec 12, 2025Updated 4 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆153Dec 31, 2025Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆636Jul 25, 2024Updated last year
- Bioinformatics tool to find integrons in bacterial genomes☆87May 7, 2025Updated 11 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆627Feb 18, 2026Updated 2 months ago
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆22May 8, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pan-genome wide association studies☆213May 29, 2024Updated last year
- Intra-species bacterial contamination detection☆25Apr 13, 2026Updated last week
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆195Apr 1, 2026Updated 2 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆173Apr 16, 2025Updated last year
- Rapid large-scale prokaryote pan genome analysis☆375Nov 3, 2025Updated 5 months ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆359Mar 29, 2026Updated 3 weeks ago
- all methods related to Enterobase☆44Sep 4, 2024Updated last year
- SeqSero2☆40Oct 1, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆34Apr 24, 2025Updated 11 months ago
- INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search☆15Dec 14, 2022Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆227Apr 14, 2026Updated last week
- Rapid determination of appropriate reference genomes.☆101Jan 22, 2025Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆107Dec 5, 2025Updated 4 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- "Reads to report" for public health and clinical microbiology☆142Dec 9, 2025Updated 4 months ago