B-UMMI / chewBBACA
BSR-Based Allele Calling Algorithm
☆142Updated this week
Alternatives and similar repositories for chewBBACA:
Users that are interested in chewBBACA are comparing it to the libraries listed below
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆141Updated 6 months ago
- An updated pipeline for pangenome investigation☆295Updated last month
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆184Updated last week
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆124Updated last month
- Metagenomic classification of long-read sequencing data☆79Updated this week
- A tool for generating consensus long-read assemblies for bacterial genomes☆120Updated this week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆122Updated 5 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆204Updated 3 weeks ago
- snipit: summarise snps relative to your reference sequence☆158Updated 2 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆318Updated 10 months ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆143Updated this week
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 10 months ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated 3 weeks ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆114Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆199Updated 7 months ago
- ☆204Updated 2 months ago
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- The ARTIC field bioinformatics pipeline☆122Updated 2 weeks ago
- Convert various sequence formats to FASTA☆134Updated 2 years ago
- Scan contig files against PubMLST typing schemes☆221Updated 2 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆222Updated 2 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆133Updated last year
- fast phage annotation program☆161Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆200Updated last year
- A user-friendly workflow for phylogenomics☆210Updated 2 weeks ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆206Updated 4 months ago
- ☆183Updated 3 weeks ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆99Updated last year