B-UMMI / chewBBACALinks
BSR-Based Allele Calling Algorithm
☆147Updated last week
Alternatives and similar repositories for chewBBACA
Users that are interested in chewBBACA are comparing it to the libraries listed below
Sorting:
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆163Updated 9 months ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆208Updated 4 months ago
- Pan-genome wide association studies☆205Updated last year
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- "Reads to report" for public health and clinical microbiology☆142Updated last month
- Convert various sequence formats to FASTA☆145Updated 2 weeks ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆150Updated 2 weeks ago
- ☆153Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- Foreign Contamination Screening caller scripts and documentation☆155Updated 10 months ago
- DAS Tool☆166Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆199Updated 4 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆175Updated this week
- A user-friendly workflow for phylogenomics☆225Updated last month
- Short Read Sequence Typing for Bacterial Pathogens☆145Updated 4 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆223Updated 2 months ago
- Create a tree using Mash distances☆177Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last week
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆123Updated last week
- Processing pipeline for pan-genome visulization and exploration☆143Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆97Updated last month
- ☆227Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆207Updated this week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆142Updated 2 years ago
- A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework☆115Updated last week
- ☆230Updated 11 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆249Updated last month
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆177Updated last week