refresh-bio / colord
A versatile compressor of third generation sequencing reads.
☆49Updated 5 months ago
Related projects: ⓘ
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 3 months ago
- Pan-Genomic Matching Statistics☆45Updated 5 months ago
- ☆64Updated 5 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆39Updated last month
- ☆56Updated 2 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆47Updated last week
- Banded Striped DNA Sequence Alignment☆46Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆33Updated 7 months ago
- ☆45Updated this week
- Identification of transposable element families from pangenome polymorphisms☆38Updated last month
- Show pangenome graphs in an easy way☆52Updated 2 years ago
- ☆29Updated 3 weeks ago
- WDL workflows for variant calling and assembly using ONT☆28Updated 2 months ago
- ☆27Updated 9 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 5 months ago
- ☆27Updated this week
- vcfdist: Accurately benchmarking phased variant calls☆70Updated last month
- Predict 5mC in PacBio HiFi reads☆30Updated 11 months ago
- VNTR annotation using motif selection☆28Updated 3 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆57Updated last week
- ☆48Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆44Updated 3 years ago
- ☆30Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆62Updated 11 months ago
- Improved Phased Assembler☆27Updated 2 years ago
- A list of software for pangenomics☆73Updated 2 weeks ago
- ☆47Updated 4 years ago