Alternatives and similar repositories for colord:

Users that are interested in colord are comparing it to the libraries listed below

• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆45Updated last year
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated 10 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆42Updated 5 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• kjenike / panagram
  ☆61Updated 2 weeks ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆77Updated this week
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆48Updated 3 weeks ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated 11 months ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 5 months ago
• human-pangenomics / hprc_intermediate_assembly
  ☆21Updated this week
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 2 weeks ago
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• AntonBankevich / LJA
  ☆113Updated last month
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆65Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆34Updated 4 months ago
• PacificBiosciences / sawfish
  Structural variant discovery and genotyping from mapped PacBio HiFi data
  ☆40Updated last month
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated last year
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆79Updated this week
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆56Updated this week
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆4Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆55Updated last year
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆33Updated this week
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆48Updated 5 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated last week
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆39Updated 3 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆49Updated 4 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆34Updated last month
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆15Updated 2 months ago