Alternatives and similar repositories for colord

Users that are interested in colord are comparing it to the libraries listed below

• seryrzu / unialigner
  ☆67Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• ChaissonLab / vamos
  VNTR annotation using motif selection
  ☆39Updated this week
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆50Updated 6 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 6 months ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆66Updated last month
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆47Updated 3 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆55Updated 3 years ago
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆49Updated 2 years ago
• shilpagarg / WHdenovo
  ☆46Updated 5 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆28Updated last year
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆70Updated last year
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• ggonnella / gfapy
  Gfapy: a flexible and extensible software library for handling sequence graphs in Python
  ☆71Updated last month
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated 2 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 3 months ago
• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆36Updated 6 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆38Updated last year
• human-pangenomics / hprc_intermediate_assembly
  ☆43Updated last week
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆59Updated 5 months ago
• kjenike / panagram
  ☆68Updated this week
• bcgsc / ntCard
  Estimating k-mer coverage histogram of genomics data
  ☆77Updated 2 years ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆69Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆55Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆53Updated 9 months ago
• morispi / CONSENT
  Scalable long read self-correction and assembly polishing with multiple sequence alignment
  ☆53Updated last year