A versatile compressor of third generation sequencing reads.
☆53Mar 24, 2024Updated 2 years ago
Alternatives and similar repositories for colord
Users that are interested in colord are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assembled Genomes Compressor (AGC) squeezing 290 GB of Human Pangenome Project assemblies down to <1.5 GB (>190× ratio), with sample and …☆187Oct 5, 2026Updated last week
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated 2 months ago
- GBWT-based handle graph☆36Oct 10, 2026Updated last week
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆22Apr 28, 2023Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆53Nov 17, 2022Updated 3 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Long read / genome alignment software☆332Dec 16, 2025Updated 10 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Sniphles is a read-based phasing approach for phased variant calling of structural variants.☆12Oct 14, 2020Updated 6 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 6 years ago
- ☆26Jul 1, 2026Updated 3 months ago
- Fastq compression☆19Oct 3, 2019Updated 7 years ago
- The Modular Aligner and The Modular SV Caller☆47Jul 18, 2023Updated 3 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 3 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Efficient low-divergence mapping of long reads in minimizer space☆70Oct 7, 2023Updated 3 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated 5 months ago
- SV calling for diploid assemblies☆32Mar 22, 2024Updated 2 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated last year
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated 2 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆73Dec 2, 2022Updated 3 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- ☆20Aug 18, 2020Updated 6 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Open Human Genome Library☆70Dec 22, 2025Updated 9 months ago