refresh-bio / colord
A versatile compressor of third generation sequencing reads.
☆50Updated last year
Alternatives and similar repositories for colord:
Users that are interested in colord are comparing it to the libraries listed below
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆48Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆79Updated last week
- Pan-Genomic Matching Statistics☆52Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 10 months ago
- Banded Striped DNA Sequence Alignment☆45Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- ☆27Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last month
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆24Updated last month
- ☆24Updated 2 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 8 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- 1-code framework: docs, C-library, and tools☆16Updated 2 months ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆56Updated last month
- ☆79Updated last month
- Simple pileup-based variant caller☆88Updated this week
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆34Updated 5 years ago
- ☆61Updated last month
- Miscellaneous scripts for applications of PacBio systems☆27Updated 3 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 5 months ago