yangao07 / abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
☆119Updated 3 weeks ago
Alternatives and similar repositories for abPOA:
Users that are interested in abPOA are comparing it to the libraries listed below
- Assembled Genomes Compressor☆160Updated 4 months ago
- Aligns short reads using dynamic seed size with strobemers☆167Updated this week
- ☆110Updated last month
- Long read aligner☆115Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Phased assembly variant caller☆112Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆186Updated this week
- A complete diploid human genome☆117Updated 3 months ago
- Research release basecalling models and configurations☆110Updated 9 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆102Updated 2 months ago
- Pangenome-based genome inference☆127Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆113Updated last week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆74Updated last month
- Structural Variant Identification Method using Genome Assemblies☆108Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆100Updated 3 weeks ago
- A fast K-mer counter for high-fidelity shotgun datasets☆124Updated 2 months ago
- Nanopore data assembler☆147Updated 3 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Variant calling tool for long-read sequencing data☆107Updated 3 weeks ago
- Pairwise whole genome aligner☆151Updated last week
- Fast and accurate coordinate conversion between assemblies☆112Updated 3 weeks ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆85Updated 8 months ago
- A list of software for pangenomics☆110Updated this week
- Evaluation and polishing workflows for T2T genome assemblies☆122Updated 6 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆133Updated last month
- Yet another k-mer analyzer☆133Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last week
- Collection of tools for the analysis of CpG data☆80Updated 2 months ago
- Constructing a pangenome gene graph☆184Updated 2 weeks ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 2 months ago