yangao07 / abPOALinks
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
☆135Updated 3 months ago
Alternatives and similar repositories for abPOA
Users that are interested in abPOA are comparing it to the libraries listed below
Sorting:
- Assembled Genomes Compressor☆178Updated last year
- alignment to variation graph inducer☆157Updated 3 weeks ago
- Yet another k-mer analyzer☆158Updated last month
- Aligns short reads using dynamic seed size with strobemers☆192Updated this week
- ☆101Updated last year
- ☆123Updated 3 weeks ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆108Updated 3 weeks ago
- Long read aligner☆114Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆122Updated 4 months ago
- BWT construction and search☆126Updated 3 weeks ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆101Updated 9 months ago
- A fast K-mer counter for high-fidelity shotgun datasets☆140Updated 3 weeks ago
- Variant calling tool for long-read sequencing data☆117Updated 10 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆132Updated 2 months ago
- A complete diploid human genome☆141Updated 4 months ago
- Fast and accurate coordinate conversion between assemblies☆118Updated 4 months ago
- Read Until client library for Nanopore Sequencing☆109Updated last year
- Research release basecalling models and configurations☆117Updated 8 months ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 4 years ago
- A tool for somatic structural variant calling using long reads☆160Updated 3 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆157Updated last week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆119Updated last week
- Pangenome-based genome inference☆155Updated 2 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Updated last week
- Visualise and analyse nanopore (ONT) raw signals☆128Updated 2 months ago
- Evaluating genome assemblies☆114Updated last month
- Structural Variant Identification Method using Genome Assemblies☆134Updated 3 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated 3 months ago