Alternatives and similar repositories for qupath-extension-align

Users that are interested in qupath-extension-align are comparing it to the libraries listed below

• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆29Updated 2 months ago
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆48Updated 5 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 3 weeks ago
• niaid / imaris_extensions
  Algorithmic and Utility Extensions for the Imaris Program
  ☆19Updated this week
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆30Updated last month
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last month
• KerenLab / CellSighter
  ☆36Updated 2 years ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆73Updated last week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 3 months ago
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆69Updated last month
• TheJacksonLaboratory / STQ
  Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
  ☆22Updated 2 weeks ago
• schienstockd / cecelia
  Framework for image and flow cytometry analysis
  ☆32Updated 2 months ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆100Updated last week
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆46Updated last year
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆39Updated 3 months ago
• fish-quant / ComSeg
  comseg
  ☆24Updated 10 months ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 7 months ago
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆17Updated last week
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆97Updated last year
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆144Updated last month
• michaellee1 / CellSeg
  ☆24Updated 2 years ago
• saramcardle / FS2K
  Files associated with the From Samples To Knowledge 2025 QuPath training course
  ☆13Updated 8 months ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last month
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆35Updated last year
• nolanlab / REDSEA
  ☆18Updated last year
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆48Updated last week
• giovp / spatialdata-sandbox
  ☆13Updated last month
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆32Updated 6 months ago
• rendeirolab / wsidata
  Efficient data structures and IO for whole slide image analysis
  ☆17Updated 3 weeks ago
• labsyspharm / minerva_analysis
  ☆27Updated 2 months ago