Alternatives and similar repositories for qupath-extension-align

Users that are interested in qupath-extension-align are comparing it to the libraries listed below

• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆25Updated 2 weeks ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆61Updated 3 months ago
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆46Updated 2 months ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆27Updated 4 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated last week
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆96Updated 5 months ago
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆66Updated this week
• nolanlab / REDSEA
  ☆18Updated last year
• niaid / imaris_extensions
  Algorithmic and Utility Extensions for the Imaris Program
  ☆18Updated last week
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆67Updated 2 years ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆33Updated 11 months ago
• TheJacksonLaboratory / STQ
  Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
  ☆21Updated 4 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆136Updated last week
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated last week
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆45Updated last year
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆94Updated last year
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆55Updated last month
• KerenLab / CellSighter
  ☆34Updated last year
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆31Updated 2 months ago
• michaellee1 / CellSeg
  ☆23Updated 2 years ago
• ashleylk / CODA
  version 1 scripts for CODA
  ☆51Updated last year
• ElementoLab / utag
  ☆39Updated last year
• fish-quant / ComSeg
  comseg
  ☆23Updated 7 months ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated last week
• HMS-IDAC / UnMicst
  UNet script, model, sample data
  ☆13Updated 6 months ago
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆16Updated last week
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆98Updated 2 months ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆37Updated last year
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 4 months ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆78Updated last month