qupath / qupath-extension-alignLinks
QuPath extension to interactively align images
☆23Updated 3 weeks ago
Alternatives and similar repositories for qupath-extension-align
Users that are interested in qupath-extension-align are comparing it to the libraries listed below
Sorting:
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- The official QuPath extension for InstanSeg☆18Updated 2 weeks ago
- QuPath extension to run StarDist nucleus detection☆40Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated last month
- Piecewise alignment for layers of mosaics☆25Updated 3 weeks ago
- ☆33Updated last year
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 months ago
- ☆26Updated last month
- ☆23Updated 2 years ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆25Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Python package for reading imaging mass cytometry (IMC) files☆15Updated last week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆22Updated this week
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆18Updated last month
- Interactive visualization of spatial omics data☆59Updated last week
- comseg☆21Updated 4 months ago
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆72Updated last month
- ☆18Updated last year
- ImgLib2 RealTransform brought to QuPath☆24Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- QuPath extension for Cellsparse☆18Updated last month
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆28Updated this week
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- version 1 scripts for CODA☆47Updated last year
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- A pipeline to transform images into valuable analysis items☆13Updated this week
- The 2023 version of cellPLATO☆15Updated 7 months ago