MaayanLab / geo2enrichrLinks
A browser extension and web application for extracting gene sets from GEO and piping them to Enrichr.
☆14Updated 2 years ago
Alternatives and similar repositories for geo2enrichr
Users that are interested in geo2enrichr are comparing it to the libraries listed below
Sorting:
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Updated 7 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Updated 4 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11Updated 5 years ago
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Updated 5 years ago
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆21Updated 3 months ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆10Updated last year
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Updated 6 years ago
- Single sample network reconstruction in R☆23Updated 5 years ago
- ☆13Updated 6 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated last month
- Toolbox package for organizing and working with TCGA data☆28Updated last week
- Interface to 10x Genomics' 1.3 m single cell data set☆18Updated 7 years ago
- Modular & interactive analysis components for bioinformatics☆18Updated last week
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Core utilities for single-cell RNA-seq☆12Updated 8 months ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 6 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Updated last month
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Updated 2 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- Tutorial for the analysis of scRNA-seq data in R☆18Updated 7 years ago
- R interface to morpheus.js heatmap widget☆39Updated 5 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆31Updated 2 weeks ago
- Bioconductor2017 workshop - Analysis of single-cell RNA-seq data: Normalization, dimensionality reduction, clustering, and lineage infere…☆11Updated 8 years ago
- Single Cell multimodal data scripts for downloading datasets☆17Updated last month
- Gene-level general linear mixed model☆23Updated 2 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago