Alternatives and similar repositories for qupath-extension-warpy:

Users that are interested in qupath-extension-warpy are comparing it to the libraries listed below

• BIOP / qupath-groovy-python-runner
  A proof of concept to run python segmentations and recovering the results within QuPath
  ☆19Updated 3 years ago
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆26Updated last week
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆48Updated last month
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆49Updated 2 months ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆20Updated last month
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆33Updated last month
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆11Updated 2 weeks ago
• clij / clupath
  GPU-accelerated image processing in QuPath
  ☆15Updated 3 years ago
• bigdataviewer / bigdataviewer-playground
  ☆19Updated last month
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆34Updated last year
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆23Updated last month
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆24Updated last week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆49Updated last week
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆17Updated last month
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆118Updated this week
• michaellee1 / CellSeg
  ☆21Updated last year
• nolanlab / TissueSchematics
  Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
  ☆10Updated last year
• ahklemm / ImageJMacro_Introduction
  A first intoduction to scripting in Fiji using the ImageJ Macro language.
  ☆24Updated 4 months ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆67Updated 4 months ago
• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated 3 months ago
• nolanlab / REDSEA
  ☆17Updated 9 months ago
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆37Updated last month
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆42Updated 3 weeks ago
• KerenLab / CellSighter
  ☆29Updated last year
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆85Updated 2 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆33Updated 2 months ago
• niaid / sitk-ibex
  Aligning images acquired with the IBEX microscopy imaging technique
  ☆17Updated this week
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆22Updated 9 months ago