BIOP / qupath-extension-warpyLinks
ImgLib2 RealTransform brought to QuPath
☆24Updated last month
Alternatives and similar repositories for qupath-extension-warpy
Users that are interested in qupath-extension-warpy are comparing it to the libraries listed below
Sorting:
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- QuPath extension to interactively align images☆23Updated last week
- The official QuPath extension for InstanSeg☆17Updated 3 weeks ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Piecewise alignment for layers of mosaics☆24Updated last week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆69Updated 3 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last week
- ☆26Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- QuPath extension for Cellsparse☆18Updated last month
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated last week
- Raw format to OME-TIFF converter☆53Updated last week
- ☆33Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 3 weeks ago
- ☆23Updated 2 years ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆20Updated 2 months ago
- QuPath extension to run StarDist nucleus detection☆39Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated last month
- Multiple-choice microscopy pipeline☆131Updated 3 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 4 months ago
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated 4 months ago
- Transfer trained StarDist models across imaging modalities☆3Updated 8 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- Algorithmic and Utility Extensions for the Imaris Program☆17Updated 8 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- Bio-Formats image file format to raw format converter☆92Updated last week
- CODEX data processing code☆12Updated this week