BIOP / qupath-extension-warpyLinks
ImgLib2 RealTransform brought to QuPath
☆24Updated last month
Alternatives and similar repositories for qupath-extension-warpy
Users that are interested in qupath-extension-warpy are comparing it to the libraries listed below
Sorting:
- The official QuPath extension for InstanSeg☆19Updated last week
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- QuPath extension to interactively align images☆23Updated 3 weeks ago
- Piecewise alignment for layers of mosaics☆25Updated last month
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last month
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆72Updated last month
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 months ago
- ☆26Updated last month
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 4 months ago
- Raw format to OME-TIFF converter☆53Updated 3 weeks ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- QuPath extension for Cellsparse☆18Updated last month
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- Microsopic Image Analyzer (MIA)☆29Updated last year
- QuPath extension to run StarDist nucleus detection☆40Updated this week
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆20Updated 2 months ago
- ☆33Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆25Updated 9 months ago
- A platform for compiling, analyzing, and exploring tracking data☆45Updated 3 months ago
- Multiple-choice microscopy pipeline☆132Updated 3 months ago
- Algorithmic and Utility Extensions for the Imaris Program☆18Updated 8 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated last month
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- MethodsJ2☆14Updated 3 years ago