BIOP / qupath-extension-warpy
ImgLib2 RealTransform brought to QuPath
☆21Updated 3 months ago
Alternatives and similar repositories for qupath-extension-warpy:
Users that are interested in qupath-extension-warpy are comparing it to the libraries listed below
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆34Updated last month
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated 3 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆48Updated last week
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- QuPath extension to interactively align images☆21Updated 2 months ago
- ☆19Updated 2 weeks ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 5 months ago
- The official QuPath extension for InstanSeg☆11Updated this week
- Raw format to OME-TIFF converter☆49Updated last week
- Algorithmic and Utility Extensions for the Imaris Program☆14Updated 4 months ago
- Multiple-choice microscopy pipeline☆120Updated 2 weeks ago
- StarDist plugin for ImageJ☆27Updated 2 years ago
- QuPath extension for Cellsparse☆18Updated 2 months ago
- ☆24Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆14Updated 2 months ago
- ☆21Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated 2 months ago
- Piecewise alignment for layers of mosaics☆23Updated last month
- Bio-Formats image file format to raw format converter☆85Updated last week
- Visualizing feature measurements on label images in napari☆10Updated 6 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆49Updated 2 weeks ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- Development of PICASSO plugin for napari☆14Updated 2 years ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- A plugin to visualise 3D spatial single cell omics☆22Updated 10 months ago