BaderLab / scRNAseqWorkflow
Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz
☆12Updated 4 years ago
Alternatives and similar repositories for scRNAseqWorkflow:
Users that are interested in scRNAseqWorkflow are comparing it to the libraries listed below
- repo to explore spatial data in R/Bioconductor and Python☆12Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆19Updated last year
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated last month
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- pipelines to process scRNA-seq data☆11Updated 4 years ago
- Gene-level general linear mixed model☆19Updated last month
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆21Updated 3 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 7 months ago
- ☆20Updated 3 months ago
- R package for Flexible dot plots☆29Updated 2 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- R package for benchmarking single cell analysis methods☆30Updated last year
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆18Updated last year
- This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on …☆13Updated 5 years ago
- ☆16Updated 10 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- 2019 single cell RNA sequencing Workshop @ UCD AND UCSF☆17Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago