Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms
☆50Oct 22, 2025Updated 10 months ago
Alternatives and similar repositories for iSCALE
Users that are interested in iSCALE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆72Sep 16, 2025Updated last year
- ☆32Apr 29, 2026Updated 4 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆68Mar 18, 2024Updated 2 years ago
- ☆14May 28, 2025Updated last year
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆23May 28, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆62Apr 26, 2022Updated 4 years ago
- ☆22Feb 5, 2025Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆56Aug 11, 2025Updated last year
- FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.☆16Apr 30, 2026Updated 4 months ago
- ☆173Dec 20, 2024Updated last year
- PyTorch implementation of HisToGene☆58Nov 30, 2021Updated 4 years ago
- Profile purification of single-cell spatial transcriptomics data☆57Jun 29, 2026Updated 2 months ago
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆18Dec 7, 2025Updated 9 months ago
- Gene Expression Prediction from Histology Images via Hypergraph Neural Networks☆18May 19, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆14Jun 10, 2025Updated last year
- Her2 Breast Cancer Project☆109Nov 27, 2022Updated 3 years ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 9 months ago
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆149Jun 3, 2025Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated 3 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆194Aug 31, 2026Updated 2 weeks ago
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 6 months ago
- ☆57Mar 28, 2025Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆76Dec 1, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Sep 30, 2024Updated last year
- DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and sin…☆99Sep 2, 2026Updated 2 weeks ago
- ☆22Oct 30, 2022Updated 3 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Updated this week
- Single-cell Spatial Transcriptomics Imputation via Style Transfer☆23Jun 3, 2026Updated 3 months ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 6 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆99Apr 30, 2026Updated 4 months ago
- ☆22Jul 7, 2026Updated 2 months ago
- ☆12Apr 25, 2026Updated 4 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆36Oct 22, 2025Updated 10 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆25Jul 30, 2026Updated last month
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- [CVPR 2025] Official Repo of Paper "FOCUS: Knowledge-enhanced Adaptive Visual Compression for Few-shot Whole Slide Image Classification"☆53Jun 6, 2025Updated last year
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- ☆137Feb 11, 2024Updated 2 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆13Aug 10, 2023Updated 3 years ago