☆26Jun 6, 2023Updated 3 years ago
Alternatives and similar repositories for CellSeg
Users that are interested in CellSeg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Aligning images acquired with the IBEX microscopy imaging technique☆20Jun 28, 2026Updated 2 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆28Dec 5, 2022Updated 3 years ago
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated last year
- A pipeline to transform images into valuable analysis items☆19Updated this week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆29Dec 3, 2025Updated 9 months ago
- QuPath extension to run StarDist nucleus detection☆50Jun 25, 2026Updated 2 months ago
- QuPath extension to interactively align images☆29Aug 7, 2025Updated last year
- RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data☆12Dec 3, 2022Updated 3 years ago
- Build contrasts for models defined with formulaic☆13Updated this week
- ☆38Dec 13, 2023Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated 3 weeks ago
- MiC is an ImageJ plugin to compare segmentation masks☆21Updated this week
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆15Oct 27, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆40May 7, 2024Updated 2 years ago
- Python tool for stitching histopathology tissue fragments into artificial whole-mounts.☆23Dec 5, 2025Updated 9 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆181Aug 7, 2026Updated last month
- ☆17Sep 11, 2026Updated last week
- Framework for registration of sequential digitized histology slices☆30Mar 24, 2022Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆73Dec 2, 2025Updated 9 months ago
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- Don't mix, match! Simple utilities for improved registration of Histopathology Whole Slide Images.☆11Oct 11, 2020Updated 5 years ago
- Spatial omics in the browser for hundreds of images at once | 10x, IMC, IF, H&E, CosMX, & more | https://rakaia.io/☆69Updated this week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Sep 26, 2021Updated 4 years ago
- MIST-inspired microscope image stitching package☆82Jan 29, 2026Updated 7 months ago
- ☆19Apr 5, 2024Updated 2 years ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆21May 25, 2026Updated 3 months ago
- ☆21Aug 10, 2026Updated last month
- Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Patholog…☆17Oct 15, 2021Updated 4 years ago
- ☆101Jul 7, 2026Updated 2 months ago
- ☆45Jan 10, 2022Updated 4 years ago
- Virtual Alignment of pathoLogy Image Series☆239Jun 25, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Nov 4, 2025Updated 10 months ago
- A foundation model-driven whole slide image-scale cell phenotyping method with QuPath integration Resources☆37Jul 28, 2026Updated last month
- A Python library for deep learning on whole-slide images☆53Nov 5, 2021Updated 4 years ago
- Coral Edge TPU compilable version of DeepLab V3☆14Jan 4, 2023Updated 3 years ago
- Loading and saving of image data.☆10Feb 9, 2024Updated 2 years ago
- Official Pytorch Code of Our Paper: Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifie…☆26May 14, 2024Updated 2 years ago
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆127Sep 8, 2026Updated last week