michaellee1 / CellSegLinks
☆23Updated 2 years ago
Alternatives and similar repositories for CellSeg
Users that are interested in CellSeg are comparing it to the libraries listed below
Sorting:
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- Piecewise alignment for layers of mosaics☆28Updated 3 weeks ago
- multimodal whole slide image registration in a graph structure☆90Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- QuPath extension to interactively align images☆24Updated last month
- ☆33Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- ☆26Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- The official QuPath extension for InstanSeg☆24Updated 2 weeks ago
- Raw format to OME-TIFF converter☆55Updated 2 months ago
- QuPath extension to run StarDist nucleus detection☆43Updated last month
- Transfer trained StarDist models across imaging modalities☆3Updated 10 months ago
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- Multiple-choice microscopy pipeline☆135Updated last week
- Cloud-based data annotation tools for biological images☆81Updated last year
- Integrated pipeline for multiplexed image analysis☆93Updated 4 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- ☆32Updated this week
- ☆18Updated last year
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆16Updated last month
- version 1 scripts for CODA☆50Updated last year
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 3 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆28Updated 3 years ago
- QuPath extension for Cellsparse☆19Updated 2 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago