michaellee1 / CellSegLinks
☆23Updated last year
Alternatives and similar repositories for CellSeg
Users that are interested in CellSeg are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆24Updated last week
- Transfer trained StarDist models across imaging modalities☆3Updated 8 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 2 weeks ago
- QuPath extension to interactively align images☆23Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- ☆32Updated last year
- QuPath extension to run StarDist nucleus detection☆39Updated last month
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- The official QuPath extension for InstanSeg☆17Updated 2 weeks ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆25Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- CODEX data processing code☆12Updated this week
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆51Updated 11 months ago
- QuPath extension for Cellsparse☆18Updated 3 weeks ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆18Updated last month
- ☆26Updated 3 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021☆21Updated 4 years ago
- A Python library for deep learning on whole-slide images☆53Updated 3 years ago
- ☆15Updated last year
- version 1 scripts for CODA☆45Updated last year
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated last month
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- ☆18Updated last year
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆56Updated last year
- multimodal whole slide image registration in a graph structure☆85Updated 11 months ago
- A toolkit for processing multiplexed tissue images☆62Updated this week