nickdelgrosso / ABBA-QuPath-RegistrationAnalysisLinks
A visualization app for 3D-registered data processed in ABBA and QuPath
☆20Updated 3 years ago
Alternatives and similar repositories for ABBA-QuPath-RegistrationAnalysis
Users that are interested in ABBA-QuPath-RegistrationAnalysis are comparing it to the libraries listed below
Sorting:
- Tools for distributed alignment of massive images☆92Updated this week
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- ☆19Updated 3 years ago
- ABBA, controlled from python☆18Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- StarDist plugin for napari☆38Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 9 months ago
- MultiModal Big Image Data Sharing and Exploration☆18Updated 3 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 months ago
- ☆38Updated 2 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 9 months ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆55Updated last month
- ☆16Updated last week
- Visualizing feature measurements on label images in napari☆10Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ☆20Updated 3 weeks ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- ☆22Updated 7 months ago
- Brainways☆22Updated 5 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- 3D shape analysis using deep learning☆29Updated 3 months ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- Process images using SimpleITK in napari☆23Updated 9 months ago
- The repository of NEUBIAS textbook 2021☆11Updated 4 years ago
- QuPath extension for Cellsparse☆19Updated 9 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Updated 4 years ago