nickdelgrosso / ABBA-QuPath-RegistrationAnalysisLinks
A visualization app for 3D-registered data processed in ABBA and QuPath
☆20Updated 3 years ago
Alternatives and similar repositories for ABBA-QuPath-RegistrationAnalysis
Users that are interested in ABBA-QuPath-RegistrationAnalysis are comparing it to the libraries listed below
Sorting:
- Tools for distributed alignment of massive images☆92Updated last week
- ABBA, controlled from python☆17Updated last month
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- MultiModal Big Image Data Sharing and Exploration☆18Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆14Updated 2 years ago
- ☆19Updated 3 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- StarDist plugin for napari☆38Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- Registration to BrainGlobe atlases in napari using Elastix☆28Updated last week
- ☆46Updated 5 years ago
- 3D shape analysis using deep learning☆29Updated 3 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆53Updated last month
- ☆20Updated last week
- StarDist plugin for ImageJ☆30Updated 3 years ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- QuPath extension for Cellsparse☆19Updated 8 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆59Updated 6 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated last month
- ☆16Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆55Updated 8 months ago
- Process images using SimpleITK in napari☆23Updated 8 months ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆56Updated last month
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- Efficient cell detection in large images using cellfinder in napari☆22Updated 2 years ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 3 months ago