saramcardle / FS2KLinks
Files associated with the From Samples To Knowledge 2025 QuPath training course
☆13Updated 7 months ago
Alternatives and similar repositories for FS2K
Users that are interested in FS2K are comparing it to the libraries listed below
Sorting:
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- Lab for quantitative bioimage analysis experiments in Python☆18Updated last week
- The official QuPath extension for InstanSeg☆28Updated last month
- Interactive visualization of spatial omics data☆73Updated last week
- ☆35Updated last year
- An introduction to OME-Zarr for big bioimaging data☆22Updated last week
- QuPath extension for Cellsparse☆19Updated 7 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆25Updated last month
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- End-to-end model for cell segmentation and classification☆22Updated 10 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last week
- QuPath extension to interactively align images☆26Updated 4 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- Image registration (alignment) software for large microscopy images☆27Updated 2 years ago
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated last week
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated last week
- A plugin to visualise 3D spatial single cell omics☆20Updated last month
- Algorithmic and Utility Extensions for the Imaris Program☆19Updated 2 weeks ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- ☆82Updated last week
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆16Updated 5 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- ☆19Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆102Updated this week