saramcardle / FS2KLinks
Files associated with the From Samples To Knowledge 2025 QuPath training course
☆12Updated last month
Alternatives and similar repositories for FS2K
Users that are interested in FS2K are comparing it to the libraries listed below
Sorting:
- The official QuPath extension for InstanSeg☆17Updated 2 weeks ago
- QuPath extension to interactively align images☆23Updated last month
- QuPath extension for Cellsparse☆18Updated 3 weeks ago
- Framework for image and flow cytometry analysis☆26Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Interactive visualization of spatial omics data☆58Updated last week
- Image registration (alignment) software for large microscopy images☆25Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- ☆32Updated last year
- A relabeling tool for tiled segmentation with Dask☆16Updated 8 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 3 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆46Updated this week
- Piecewise alignment for layers of mosaics☆24Updated last week
- The 2023 version of cellPLATO☆15Updated 6 months ago
- ImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.☆14Updated 2 months ago
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- ☆17Updated last week
- MethodsJ2☆14Updated 3 years ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- ☆26Updated 3 weeks ago
- Python package for reading imaging mass cytometry (IMC) files☆15Updated last week
- Transfer trained StarDist models across imaging modalities☆3Updated 8 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆28Updated 3 weeks ago
- Guides and code for 3D nuclear instance segmentation☆22Updated last month