niaid / imaris_extensionsLinks
Algorithmic and Utility Extensions for the Imaris Program
☆18Updated last month
Alternatives and similar repositories for imaris_extensions
Users that are interested in imaris_extensions are comparing it to the libraries listed below
Sorting:
- QuPath extension to interactively align images☆25Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 weeks ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 4 years ago
- Python package for reading imaging mass cytometry (IMC) files☆16Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated last week
- A pipeline to transform images into valuable analysis items☆15Updated 3 months ago
- Helper functions for working with inForm data.☆18Updated 3 years ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 4 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated last month
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated 3 weeks ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆16Updated last year
- ☆15Updated 3 years ago
- Interactive visualization of spatial omics data☆67Updated last week
- The official QuPath extension for InstanSeg☆26Updated this week
- Spatial analysis of FISH data☆32Updated 4 months ago
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- End-to-end model for cell segmentation and classification☆20Updated 8 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated 2 weeks ago
- Allen Brain Atlas utilities, parsers and data structures☆11Updated 8 years ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 5 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆63Updated 4 months ago
- Analysis of smFISH data☆11Updated 7 years ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- MERFISH decoding software☆26Updated last month
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 5 months ago