niaid / imaris_extensionsLinks
Algorithmic and Utility Extensions for the Imaris Program
☆18Updated 8 months ago
Alternatives and similar repositories for imaris_extensions
Users that are interested in imaris_extensions are comparing it to the libraries listed below
Sorting:
- QuPath extension to interactively align images☆23Updated last week
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated last month
- Helper functions for working with inForm data.☆16Updated 3 years ago
- Analysis of smFISH data☆11Updated 6 years ago
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated 4 months ago
- ☆27Updated 8 months ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆16Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- Python package for reading imaging mass cytometry (IMC) files☆15Updated this week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated last week
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- ☆15Updated 8 months ago
- Repository for storing prototype functionality implementations for the BKP☆27Updated 2 weeks ago
- Framework for image and flow cytometry analysis☆26Updated 3 weeks ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆18Updated last month
- An automatic deep learning algorithm for spot detection in fluorescence microscopy images.☆21Updated last week
- Interactive visualization of spatial omics data☆58Updated this week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …☆16Updated 9 years ago
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 6 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆27Updated last week