niaid / imaris_extensions
Algorithmic and Utility Extensions for the Imaris Program
☆14Updated last month
Related projects ⓘ
Alternatives and complementary repositories for imaris_extensions
- QuPath extension to interactively align images☆19Updated 3 months ago
- Aligning images acquired with the IBEX microscopy imaging technique☆17Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- The official QuPath extension for InstanSeg☆10Updated last week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆27Updated last month
- Whole slide image registration through wsireg in napari.☆12Updated last year
- Tool for precise, interactive, fast and scalable FISH spot detection☆47Updated 2 months ago
- Interactive visualization of spatial omics data☆41Updated this week
- ImgLib2 RealTransform brought to QuPath☆20Updated 2 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆25Updated 3 weeks ago
- Raw format to OME-TIFF converter☆49Updated last week
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆14Updated this week
- Framework for image and flow cytometry analysis☆12Updated this week
- A plugin to visualise 3D spatial single cell omics☆21Updated 7 months ago
- Image registration (alignment) software for large microscopy images☆21Updated last year
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 3 years ago
- Helper functions for working with inForm data.☆13Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- Deconvolution of widefield microscopy images and generation of point spread functions☆42Updated last month
- Development of PICASSO plugin for napari☆13Updated last year
- Toolbox for the analysis of smFISH images.☆57Updated last year
- ☆17Updated 7 months ago
- ☆23Updated last month
- Graph-based Decoding for In Situ Sequencing☆10Updated 4 years ago
- MethodsJ2☆14Updated 2 years ago
- QuPath extension for Cellsparse☆15Updated 4 months ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- ☆29Updated 11 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Python package for reading imaging mass cytometry (IMC) files☆12Updated this week