pachterlab / CBP_2021Links
☆16Updated 3 years ago
Alternatives and similar repositories for CBP_2021
Users that are interested in CBP_2021 are comparing it to the libraries listed below
Sorting:
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- The art of using t-SNE for single-cell transcriptomics☆127Updated 9 months ago
- Conditional out-of-distribution prediction☆63Updated last year
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21Updated 3 months ago
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated last month
- Multi-omics studies are available here☆52Updated 3 years ago
- ☆19Updated 4 years ago
- Software for processing and analyzing STARmap experiments.☆38Updated 6 years ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆55Updated 11 months ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆54Updated 2 months ago
- Human cortical cell types☆24Updated 6 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Quantifying experimental perturbations at single cell resolution☆109Updated 11 months ago
- ☆20Updated 4 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 11 months ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆41Updated 2 years ago
- Archetypal Analysis network (AAnet)☆37Updated 6 months ago
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- ☆28Updated 10 months ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- ☆15Updated 11 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆17Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago