Alternatives and similar repositories for CBP_2021

Users that are interested in CBP_2021 are comparing it to the libraries listed below

• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• AllenInstitute / MTG_celltypes
  Human cortical cell types
  ☆24Updated 5 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated last year
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 3 weeks ago
• mbernste / SpatialCorr
  SpatialCorr: Identify gene sets with spatially varying correlation
  ☆17Updated last year
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 8 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 4 months ago
• tare / Splotch
  Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
  ☆21Updated 2 weeks ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆21Updated 3 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated last year
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated 2 months ago
• marrlab / HematoFatePrediction
  Code accompanying "Prospective identification of hematopoietic lineage choice by deep learning", Nature methods 2017, DOI:10.1038/nmeth.4…
  ☆20Updated 2 years ago
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆44Updated last week
• weallen / STARmap
  Software for processing and analyzing STARmap experiments.
  ☆38Updated 5 years ago
• sfortma2 / scranPY
  A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing
  ☆34Updated last year
• tudaga / NMFreg_tutorial
  A tutorial on NMFreg applied to cerebellum data.
  ☆12Updated 5 years ago
• theislab / interactive_plotting
  ☆21Updated 4 years ago
• alexandrovteam / SpaceM
  ☆15Updated 8 months ago
• simslab / scHPF
  Single-cell Hierarchical Poisson Factorization
  ☆70Updated 2 years ago
• mvinyard / torch-adata
  Create PyTorch Datasets from AnnData
  ☆20Updated 2 months ago
• hms-dbmi / brainmapr
  R package to infer spatial location of neuronal subpopulations within the developing mouse brain by integrating single-cell RNA-seq data …
  ☆16Updated 9 years ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆58Updated last year
• feldman4 / OpticalPooledScreens_2019
  Examples and code for optical pooled screens
  ☆10Updated 2 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• jlakkis / CarDEC
  ☆19Updated 4 years ago
• daniel-munro / imageCCA
  Code for preparing and running the imageCCA method.
  ☆20Updated 7 years ago