pachterlab / CBP_2021Links
☆16Updated 3 years ago
Alternatives and similar repositories for CBP_2021
Users that are interested in CBP_2021 are comparing it to the libraries listed below
Sorting:
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 weeks ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- ☆19Updated 4 years ago
- Conditional out-of-distribution prediction☆63Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last week
- Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data☆21Updated 4 months ago
- Create PyTorch Datasets from AnnData☆21Updated 7 months ago
- The art of using t-SNE for single-cell transcriptomics☆129Updated 10 months ago
- Single-cell Hierarchical Poisson Factorization☆73Updated 3 years ago
- Multi-omics studies are available here☆52Updated 3 years ago
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- Creating multi-resolution embeddings and clusters from high dimensional data☆56Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- Software for processing and analyzing STARmap experiments.☆38Updated 6 years ago
- Nonnegative spatial factorization for multivariate count data☆59Updated 2 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Archetypal Analysis network (AAnet)☆37Updated 8 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆65Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆28Updated last year
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Updated last year
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆35Updated last year
- An interface for Nested Stochastic Block Model for single cell analysis☆37Updated last week
- Human cortical cell types☆24Updated 6 years ago