sebastianffx / stainlibLinks
Python 3 library for the augmentation & normalization of H&E images
☆62Updated 3 years ago
Alternatives and similar repositories for stainlib
Users that are interested in stainlib are comparing it to the libraries listed below
Sorting:
- Pipeline for computational pathology☆37Updated last year
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆38Updated 4 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆57Updated 2 years ago
- ☆46Updated 3 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆84Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆76Updated 9 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆36Updated 10 months ago
- GPU-accelerated stain normalization command line tool☆24Updated 2 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆79Updated 10 months ago
- Data and code to accompany our Nature publication☆48Updated 3 years ago
- A pipeline to segment tissue from the background in histological images☆71Updated 2 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆55Updated 3 years ago
- A tool for rapidly labeling objects using deep learning feature embedding☆34Updated 3 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆107Updated last month
- Synthetic histology using GANs, for deep learning model explainability and trainee education.☆16Updated last year
- ☆57Updated 3 years ago
- Deep Learning-based Frozen Section to FFPE Translation☆65Updated last year
- A Python library for deep learning on whole-slide images☆53Updated 4 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆108Updated 2 years ago
- Stain normalization tools for histological analysis and computational pathology☆165Updated last month
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆70Updated 3 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆29Updated last year
- ☆20Updated 3 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆109Updated 10 months ago
- Re-stained whole slide image alignment☆36Updated 2 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Updated 3 years ago
- Histopathology Image Analysis☆92Updated 2 years ago
- ☆10Updated 2 years ago
- Code from Foersch et al. (Under Construction / Development)☆38Updated 2 years ago