Python 3 library for the augmentation & normalization of H&E images
☆66Sep 12, 2022Updated 3 years ago
Alternatives and similar repositories for stainlib
Users that are interested in stainlib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 17, 2023Updated 3 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆56Jun 20, 2023Updated 3 years ago
- GPU-accelerated stain normalization command line tool☆25Oct 19, 2023Updated 2 years ago
- Preprocessing module for large histological images☆21Jun 16, 2023Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆190Nov 13, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for tissue image stain normalisation and augmentation in Python 3☆347May 8, 2021Updated 5 years ago
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆95May 23, 2023Updated 3 years ago
- A tool for rapidly labeling objects using deep learning feature embedding☆36Updated this week
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆144Jun 9, 2022Updated 4 years ago
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Aug 17, 2024Updated 2 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆30May 21, 2024Updated 2 years ago
- A Python package for plotting Kaplan-Meier survival curves☆12Jan 5, 2025Updated last year
- ☆37Mar 21, 2025Updated last year
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆87Jul 11, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Computational Pathology Toolbox developed by TIA Centre, University of Warwick.☆547Updated this week
- a toolbox for manipulation of digital pathology slides and annotations☆18Aug 11, 2020Updated 6 years ago
- Gpu accelerated vahadane stain normalization for Digital Pathology workflows.☆28Feb 23, 2024Updated 2 years ago
- An open-source digital pathology based rapid image annotation tool☆92Aug 21, 2026Updated last week
- [CVPR 2024] Self-Supervised Vision Mamba for Histopathology Images☆60Jul 23, 2025Updated last year
- Predicting Ovarian Cancer Treatment Response in Histopathology using Hierarchical Vision Transformers and Multiple Instance Learning☆12Nov 29, 2023Updated 2 years ago
- ☆17Nov 3, 2023Updated 2 years ago
- Benchmarking toolkit for patch-based histopathology image classification.☆44Jun 2, 2023Updated 3 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆58Sep 25, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- StainNet: a fast and robust stain normalization network☆57Nov 23, 2021Updated 4 years ago
- Pretrained model for self supervised histopathology☆121Jun 27, 2022Updated 4 years ago
- QuPath extension to interactively align images☆29Aug 7, 2025Updated last year
- ☆25Dec 20, 2022Updated 3 years ago
- Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Patholog…☆17Oct 15, 2021Updated 4 years ago
- SONNET: A self-guided ordinal regression neural network for segmentation and classification of nuclei in large-scale multi-tissue histolo…☆17Sep 15, 2021Updated 4 years ago
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆61Mar 5, 2022Updated 4 years ago
- H&E histopathological staining normalization☆112Jan 24, 2020Updated 6 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆113Jun 9, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications☆24Dec 11, 2023Updated 2 years ago
- Solid Tumor Associative Modeling in Pathology☆127Aug 21, 2026Updated last week
- Implementation of the paper "A survey on attention mechanisms for medical applications: are we moving towards better algorithms?" by Tiag…☆13Sep 25, 2022Updated 3 years ago
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆44Apr 7, 2025Updated last year
- ☆18Apr 11, 2026Updated 4 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆39Aug 3, 2026Updated 3 weeks ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆54Apr 2, 2023Updated 3 years ago