sebastianffx / stainlib
Python 3 library for the augmentation & normalization of H&E images
☆52Updated 2 years ago
Alternatives and similar repositories for stainlib:
Users that are interested in stainlib are comparing it to the libraries listed below
- Pipeline for computational pathology☆34Updated last year
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆28Updated 9 months ago
- Solid Tumor Associative Modeling in Pathology☆58Updated this week
- Re-stained whole slide image alignment☆32Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆30Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆34Updated last week
- Histopathology Image Analysis☆93Updated last year
- Toolbox for measuring adversarial robustness to many transforms☆19Updated 2 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- A pipeline to segment tissue from the background in histological images☆67Updated last year
- Whole Slide image (WSI) conversion for brightfield histology images☆34Updated this week
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆54Updated 2 weeks ago
- ☆40Updated 3 years ago
- Stain normalization tools for histological analysis and computational pathology☆128Updated last month
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆51Updated 2 years ago
- ☆36Updated 2 years ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆66Updated last year
- A tool for rapidly labeling objects using deep learning feature embedding☆30Updated 6 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆96Updated 2 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- GPU-accelerated stain normalization command line tool☆19Updated last year
- Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine☆30Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆66Updated 7 months ago
- Histopathology Slides Preprocessing Pipeline☆36Updated 2 months ago
- List of pathology feature extractors and foundation models☆94Updated 3 weeks ago
- Data and code to accompany our Nature publication☆44Updated 2 years ago
- Inference code for HoVer-NeXt☆28Updated last week
- DeeperHistReg - Source Code☆45Updated 9 months ago