akoyabio / phenoptrLinks
Helper functions for working with inForm data.
☆18Updated 3 years ago
Alternatives and similar repositories for phenoptr
Users that are interested in phenoptr are comparing it to the libraries listed below
Sorting:
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Updated last month
- R package for visualization of highly multiplexed imaging data☆33Updated 3 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 2 weeks ago
- ☆28Updated 10 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆49Updated 3 years ago
- An R package for performing cell typing in SMI and other single cell data☆39Updated 3 months ago
- ☆38Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 6 months ago
- ☆26Updated 5 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 3 years ago
- ☆19Updated 5 years ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆78Updated 3 years ago
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- An R package for handling and analysing imaging mass cytometry data☆27Updated last month
- ☆53Updated 2 years ago
- ☆13Updated 6 years ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- ☆24Updated 5 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- R based workflow for multiplexed imaging data☆32Updated last month
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated 4 months ago
- ☆19Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 9 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆36Updated 2 months ago
- MERFISH decoding software☆26Updated 2 weeks ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆54Updated 2 months ago
- R package for normalisation of spatial transcriptomics data☆13Updated 2 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Updated last year
- Scripts from the GBM cellular states paper☆19Updated 4 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆64Updated 9 months ago