Bayer-Group / paquoLinks
PAthological QUpath Obsession - QuPath and Python conversations
☆122Updated last month
Alternatives and similar repositories for paquo
Users that are interested in paquo are comparing it to the libraries listed below
Sorting:
- QuPath extension for Segment Anything Model (SAM)☆122Updated 3 months ago
- multimodal whole slide image registration in a graph structure☆95Updated last year
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆82Updated last year
- ☆188Updated this week
- ☆72Updated last month
- Codebase for "A Foundation Model for Cell Segmentation"☆110Updated 2 weeks ago
- Virtual Alignment of pathoLogy Image Series☆185Updated 4 months ago
- Whole Slide image (WSI) conversion for brightfield histology images☆36Updated last week
- Segment Anything for Histopathology☆50Updated 2 weeks ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- ☆28Updated 5 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆81Updated 3 weeks ago
- ☆36Updated 7 months ago
- TiffSlide - cloud native openslide-python replacement based on tifffile☆103Updated 4 months ago
- Bio-Formats image file format to raw format converter☆98Updated last month
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆26Updated 3 months ago
- Piecewise alignment for layers of mosaics☆29Updated last month
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 5 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆130Updated last week
- ⚡ Open-source software for deep learning-based digital pathology☆138Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆56Updated last year
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆38Updated last year
- An introduction to deepcell and deep learning☆154Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆70Updated 7 months ago
- A tool for rapidly labeling objects using deep learning feature embedding☆33Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- Raw format to OME-TIFF converter☆56Updated last month
- Re-stained whole slide image alignment☆35Updated 2 years ago
- ☆32Updated 2 months ago
- An open-source digital pathology based rapid image annotation tool☆86Updated 2 weeks ago