Bayer-Group / paquo
PAthological QUpath Obsession - QuPath and Python conversations
☆112Updated last month
Alternatives and similar repositories for paquo:
Users that are interested in paquo are comparing it to the libraries listed below
- QuPath extension for Segment Anything Model (SAM)☆96Updated 3 weeks ago
- Virtual Alignment of pathoLogy Image Series☆143Updated 2 months ago
- multimodal whole slide image registration in a graph structure☆81Updated 7 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆65Updated 7 months ago
- Pipeline for computational pathology☆34Updated last year
- Whole Slide image (WSI) conversion for brightfield histology images☆34Updated last week
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 8 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆30Updated last year
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- ⚡ Open-source software for deep learning-based digital pathology☆128Updated 8 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated 2 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 5 months ago
- List of pathology feature extractors and foundation models☆91Updated 2 weeks ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆66Updated last year
- ☆136Updated last week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆23Updated 2 months ago
- Python 3 library for the augmentation & normalization of H&E images☆51Updated 2 years ago
- Tools to build deep learning pipelines.☆91Updated 3 months ago
- An open-source digital pathology based rapid image annotation tool☆75Updated this week
- A pipeline to segment tissue from the background in histological images☆67Updated last year
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆15Updated 4 years ago
- Encoder-Decoder Cell and Nuclei segmentation models☆88Updated 7 months ago
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆96Updated 2 months ago
- Cloud-based data annotation tools for biological images☆77Updated last year
- ☆24Updated 3 weeks ago
- Histopathology Image Analysis☆93Updated last year
- ☆28Updated 3 months ago
- An introduction to deepcell and deep learning☆144Updated 3 months ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆30Updated 9 months ago
- HistoQC is an open-source quality control tool for digital pathology slides☆280Updated last month