Alternatives and similar repositories for paquo:

Users that are interested in paquo are comparing it to the libraries listed below

• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆107Updated last month
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆156Updated 4 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆85Updated 10 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆69Updated 9 months ago
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆35Updated last year
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated last month
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆100Updated 5 months ago
• instanseg / instanseg
  ☆158Updated 2 weeks ago
• arjvik / QuPath-Scripting-Tools
  Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…
  ☆17Updated 4 years ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆24Updated 3 weeks ago
• manuel-munoz-aguirre / PyHIST
  A pipeline to segment tissue from the background in histological images
  ☆69Updated 2 years ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 10 months ago
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆27Updated 3 weeks ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆73Updated this week
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆100Updated 5 months ago
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆119Updated 3 months ago
• KatherLab / HIA
  Histopathology Image Analysis
  ☆93Updated last year
• choosehappy / HistoQC
  HistoQC is an open-source quality control tool for digital pathology slides
  ☆290Updated 4 months ago
• DIAGNijmegen / pathology-artifact-detection
  Quality control of whole-slide images through multi-class semantic segmentation of artifacts
  ☆31Updated last year
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆68Updated last year
• choosehappy / HoverFast
  Blazing fast nuclei segmentation for brightfield Whole Slide Images
  ☆35Updated 2 months ago
• impromptuRong / hd_wsi
  ☆32Updated last month
• EIDOSLAB / torchstain
  Stain normalization tools for histological analysis and computational pathology
  ☆138Updated 3 months ago
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆60Updated 3 months ago
• sebastianffx / stainlib
  Python 3 library for the augmentation & normalization of H&E images
  ☆54Updated 2 years ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆33Updated last year
• smujiang / WSITools
  Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…
  ☆52Updated 4 months ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆68Updated 7 months ago
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆134Updated 10 months ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆67Updated 2 years ago