guott15 / SPIRALLinks
☆16Updated 7 months ago
Alternatives and similar repositories for SPIRAL
Users that are interested in SPIRAL are comparing it to the libraries listed below
Sorting:
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- ☆31Updated 7 months ago
- ☆50Updated 4 months ago
- CAST package☆40Updated 11 months ago
- Spatial direct messaging detected by bivariate Moran☆28Updated 2 months ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆61Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 2 years ago
- ☆31Updated 2 months ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆38Updated 6 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 5 months ago
- ☆30Updated 4 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated last month
- Detect hierarchical structures in cell-cell communications☆15Updated 8 months ago
- Reproducibility repository for the Human Neural Organoid Atlas publication☆39Updated 9 months ago
- ☆18Updated 3 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- ☆55Updated last year
- scTM: A package for topic modelling in transcriptomics data☆22Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 3 years ago
- ☆37Updated 4 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- ☆19Updated 3 years ago
- Implementation of CellNEST method☆49Updated this week
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Updated 11 months ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated last year
- Code used to benchmark Xenium☆66Updated last year