choosehappy / QuPathGeoJSONImportExport
Coincides with blogpost for using geojson and shapely
☆31Updated 4 years ago
Alternatives and similar repositories for QuPathGeoJSONImportExport:
Users that are interested in QuPathGeoJSONImportExport are comparing it to the libraries listed below
- 🔬 Code-free deep segmentation for computational pathology☆53Updated 8 months ago
- An open-source digital pathology based rapid image annotation tool☆75Updated this week
- Re-stained whole slide image alignment☆32Updated last year
- Pipeline for computational pathology☆34Updated last year
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆66Updated 2 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆52Updated last year
- Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay☆67Updated last month
- Python 3 library for the augmentation & normalization of H&E images☆52Updated 2 years ago
- Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning☆52Updated last year
- Interactive Segmentation of Nucleus☆61Updated 2 years ago
- NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation☆51Updated 2 years ago
- ☆57Updated 4 months ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆65Updated 7 months ago
- Quality control of whole-slide images through multi-class semantic segmentation of artifacts☆30Updated last year
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆31Updated 3 weeks ago
- A Girder plugin for pathology image annotations and analysis.☆63Updated this week
- Whole Slide image (WSI) conversion for brightfield histology images☆34Updated this week
- A Python library for deep learning on whole-slide images☆51Updated 3 years ago
- A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.☆28Updated 8 months ago
- GPU-accelerated stain normalization command line tool☆19Updated last year
- ☆28Updated 3 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆23Updated this week
- ☆40Updated 3 years ago
- ☆35Updated last year
- A pipeline to segment tissue from the background in histological images☆67Updated last year
- Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning☆27Updated 4 years ago
- Solid Tumor Associative Modeling in Pathology☆58Updated this week
- Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.☆60Updated 3 years ago
- Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks☆23Updated last year
- Preprocessing module for large histological images☆19Updated last year