AllenInstitute / nomenclatureLinks
This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".
☆13Updated 3 years ago
Alternatives and similar repositories for nomenclature
Users that are interested in nomenclature are comparing it to the libraries listed below
Sorting:
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Updated 3 months ago
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Updated last year
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Updated 5 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- R API and htmlwidget for Vitessce☆44Updated 4 months ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- Building Gene Sets and Mapping mFISH Data☆16Updated 4 months ago
- ☆13Updated 7 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago
- ☆21Updated 3 years ago
- ☆26Updated 7 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- An R package for performing cell typing in SMI and other single cell data☆45Updated 7 months ago
- Efficiently compute robust markers across single-cell datasets☆11Updated 4 years ago
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- scID☆13Updated 4 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- ☆37Updated 9 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 2 years ago
- ☆19Updated 4 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Updated 3 months ago
- Tools for analyzing Slide-seq data☆31Updated 2 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 7 years ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- ☆16Updated 4 years ago
- ☆30Updated 3 years ago