This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".
☆13Apr 25, 2022Updated 3 years ago
Alternatives and similar repositories for nomenclature
Users that are interested in nomenclature are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- General, open-standard schema for cell annotations☆16Jun 16, 2025Updated 9 months ago
- Single cell RNA-seq analysis for transcriptomic type characterization☆38Mar 20, 2026Updated last week
- ☆17Oct 3, 2022Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Hierarchical, iterative clustering for analysis of transcriptomics data in R☆120Aug 20, 2025Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- ☆26May 16, 2025Updated 10 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Dec 5, 2023Updated 2 years ago
- Core utilities for single-cell RNA-seq☆12Apr 13, 2025Updated 11 months ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated 7 months ago
- scID☆14Oct 21, 2021Updated 4 years ago
- ☆13Nov 13, 2018Updated 7 years ago
- ☆48Mar 1, 2018Updated 8 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Shiny app for visualization, exploration of mouse brain single cell gene expression☆11Oct 31, 2018Updated 7 years ago
- Automated marker-based annotation of cell types☆14Aug 8, 2022Updated 3 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆61Updated this week
- Hosted version of cellxgene☆22Updated this week
- Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz☆11Apr 22, 2020Updated 5 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- ☆16Nov 5, 2021Updated 4 years ago
- Cell type matching in single-cell RNA-sequencing data using FR-Match☆19Feb 16, 2026Updated last month
- A stitching platform for InXight☆15Mar 28, 2025Updated 11 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Analysis for BICCN cross-species primary motor cortex project☆23Feb 13, 2024Updated 2 years ago
- ☆16May 25, 2021Updated 4 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21Oct 30, 2025Updated 4 months ago
- ☆17Sep 20, 2021Updated 4 years ago
- Making neuroimaging open from the grounds (consent form) and up (tools)☆45Mar 13, 2026Updated last week
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Nov 16, 2021Updated 4 years ago
- QC and cell type assignment for patch-seq transcriptomics data☆24May 3, 2024Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆97Nov 24, 2020Updated 5 years ago
- Convert csv into a GitHub Flavored Markdown table☆29Oct 18, 2021Updated 4 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆58Jan 30, 2026Updated last month
- Creating the code base for All-active Model generation written on top of Bluepyopt☆17Dec 1, 2020Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Mar 18, 2023Updated 3 years ago
- Code and documentation for the curation of cellxgene datasets☆53Updated this week
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Collection of cell type reference datasets.☆64May 31, 2024Updated last year
- Single Cell Consensus Clustering with Speed☆21Dec 12, 2022Updated 3 years ago