QuPath documentation
☆22Mar 2, 2026Updated last month
Alternatives and similar repositories for qupath-docs
Users that are interested in qupath-docs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ImgLib2 RealTransform brought to QuPath☆31Mar 12, 2026Updated last month
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated 3 months ago
- QuPath extension to run StarDist nucleus detection☆48Jul 2, 2025Updated 9 months ago
- QuPath extension to interactively align images☆27Aug 7, 2025Updated 8 months ago
- Trained models for use with QuPath☆16Aug 7, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆91Feb 5, 2026Updated 2 months ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Jun 14, 2024Updated last year
- Import Data from the Cochrane Database of Systematic Reviews (CDSR)☆28Nov 27, 2025Updated 5 months ago
- BIPs☆28Dec 26, 2017Updated 8 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆15Oct 23, 2024Updated last year
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆28Dec 3, 2025Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Intelligent data partitioning using quality control metrics☆18Jun 10, 2025Updated 10 months ago
- R package for integrating and comparing multiple single cell genomic datasets☆11Dec 27, 2020Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data☆10May 26, 2023Updated 2 years ago
- R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)☆17Apr 12, 2024Updated 2 years ago
- Highly informative TCR representation model☆16Nov 26, 2025Updated 5 months ago
- ☆37Oct 22, 2025Updated 6 months ago
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆18Apr 14, 2026Updated 2 weeks ago
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- Human cortical cell types☆25Aug 21, 2019Updated 6 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ☆17Nov 5, 2024Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- 💬 Simple flexible tooltips for Shiny apps☆17Sep 27, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Collection of 3D Slicer modules mainly focused on deep brain stimulation applications.☆18Nov 10, 2025Updated 5 months ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- ImageJ plugins to run ilastik workflows☆27Mar 9, 2026Updated last month
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated 8 months ago
- Extension to QuPath application adding support for reading from Google Cloud Healthcare API.☆22Dec 20, 2021Updated 4 years ago
- ☆17Apr 9, 2021Updated 5 years ago
- Python utility and library for converting Nikon .nd2 files to pyramidal OME TIFF.☆12May 13, 2022Updated 3 years ago