QuPath documentation
☆21Mar 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for qupath-docs
Users that are interested in qupath-docs are comparing it to the libraries listed below
Sorting:
- ImgLib2 RealTransform brought to QuPath☆29Mar 12, 2026Updated last week
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated last month
- QuPath extension to run StarDist nucleus detection☆48Jul 2, 2025Updated 8 months ago
- QuPath extension to interactively align images☆26Aug 7, 2025Updated 7 months ago
- Trained models for use with QuPath☆16Aug 7, 2021Updated 4 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆89Feb 5, 2026Updated last month
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- 🔬 Code-free deep segmentation for computational pathology☆56Jun 14, 2024Updated last year
- Import Data from the Cochrane Database of Systematic Reviews (CDSR)☆27Nov 27, 2025Updated 3 months ago
- QuPath TIL classifier for Melanoma on HE slides☆10Jul 24, 2019Updated 6 years ago
- Zenith of Event-based Time-locked Anomalies☆15Feb 26, 2024Updated 2 years ago
- QuPath extension for Segment Anything Model (SAM)☆130Feb 15, 2026Updated last month
- BIPs☆28Dec 26, 2017Updated 8 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- scripts for microbiome analysis☆12Jul 25, 2024Updated last year
- Codebase for the paper Zucha et al. titled "Spatiotemporal transcriptomic map of glial cell response in mouse model of acute brain ischem…☆13Oct 23, 2024Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆28Dec 3, 2025Updated 3 months ago
- Intelligent data partitioning using quality control metrics☆19Jun 10, 2025Updated 9 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- ☆35Oct 22, 2025Updated 4 months ago
- R package for integrating and comparing multiple single cell genomic datasets☆11Dec 27, 2020Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)☆17Apr 12, 2024Updated last year
- Highly informative TCR representation model☆15Nov 26, 2025Updated 3 months ago
- Standalone shiny server container for viewing CellChat object☆13Feb 18, 2021Updated 5 years ago
- Code to reproduce analysis of Milo manuscript☆15Aug 3, 2022Updated 3 years ago
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆18Jan 21, 2025Updated last year
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 2 years ago
- Human cortical cell types☆25Aug 21, 2019Updated 6 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- ☆16Nov 5, 2024Updated last year
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- 💬 Simple flexible tooltips for Shiny apps☆17Sep 27, 2023Updated 2 years ago
- QuPath - Open-source bioimage analysis for research☆1,311Mar 12, 2026Updated last week
- Collection of 3D Slicer modules mainly focused on deep brain stimulation applications.☆18Nov 10, 2025Updated 4 months ago
- ImageJ plugins to run ilastik workflows☆27Mar 9, 2026Updated last week
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago