Alternatives and similar repositories for qupath-extension-cellpose

Users that are interested in qupath-extension-cellpose are comparing it to the libraries listed below

• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆27Updated 4 months ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• peng-lab / BaSiCPy
  ☆87Updated 5 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆61Updated 4 months ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆25Updated 3 weeks ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆38Updated 3 months ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆136Updated last week
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆46Updated 2 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆94Updated last year
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆55Updated last week
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆151Updated last month
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 2 weeks ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆97Updated last week
• BIOP / ijp-kheops
  ☆20Updated last month
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆179Updated this week
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆94Updated last month
• instanseg / instanseg
  ☆183Updated 2 months ago
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆31Updated 2 months ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆25Updated last month
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆97Updated 5 months ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆99Updated last month
• scverse / napari-spatialdata
  Interactive visualization of spatial omics data
  ☆67Updated this week
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆117Updated last month
• BIOP / qupath-groovy-python-runner
  A proof of concept to run python segmentations and recovering the results within QuPath
  ☆19Updated 4 years ago
• KerenLab / CellSighter
  ☆34Updated last year
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆72Updated last month
• nygctech / PICASSO
  Development of PICASSO plugin for napari
  ☆16Updated 2 years ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆153Updated 10 months ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 4 months ago
• petebankhead / qupath
  QuPath - Open-source bioimage analysis for research
  ☆49Updated last week