BIOP / qupath-extension-cellposeLinks
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
☆87Updated last week
Alternatives and similar repositories for qupath-extension-cellpose
Users that are interested in qupath-extension-cellpose are comparing it to the libraries listed below
Sorting:
- ☆30Updated 3 weeks ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- QuPath extension to run StarDist nucleus detection☆48Updated 7 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- ☆92Updated 3 months ago
- The official QuPath extension for InstanSeg☆29Updated 3 weeks ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆40Updated last month
- QuPath extension for Segment Anything Model (SAM)☆126Updated this week
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- multimodal whole slide image registration in a graph structure☆100Updated last year
- ☆209Updated last week
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Updated 7 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆133Updated 5 months ago
- Bio-Formats image file format to raw format converter☆103Updated last month
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆192Updated last week
- QuPath extension to interactively align images☆26Updated 6 months ago
- Multiple-choice microscopy pipeline☆145Updated 2 weeks ago
- ☆20Updated 3 weeks ago
- ☆37Updated 2 years ago
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- QuPath extension for Cellsparse☆19Updated 9 months ago
- Development of PICASSO plugin for napari☆16Updated 3 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated this week
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Updated 4 years ago
- QuPath - Open-source bioimage analysis for research☆50Updated this week
- ☆12Updated last year
- Accurate and efficient spot detection for microscopy data☆117Updated last week
- CellProfiler tutorial pipelines and images☆99Updated last week
- Interactive visualization of spatial omics data☆75Updated last week
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆84Updated 2 months ago