FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.
☆15Apr 30, 2026Updated 2 months ago
Alternatives and similar repositories for FastReseg
Users that are interested in FastReseg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hosted version of cellxgene☆20Updated this week
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆111Jun 27, 2026Updated last week
- QuPath extension to interactively align images☆29Aug 7, 2025Updated 10 months ago
- An R package to convert SingeCellExperiment and Seurat objects into anndata as comprehensively as possible.☆14May 19, 2026Updated last month
- Scientific Note Taking☆14Oct 29, 2016Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆21Aug 17, 2023Updated 2 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 9 months ago
- ☆47Jun 1, 2026Updated last month
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- Scalable Open Source PostgreSQL-based Database Cluster☆16Aug 22, 2017Updated 8 years ago
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆39Jun 26, 2026Updated last week
- ☆30Jan 22, 2025Updated last year
- Probabilistic cell segmentation for in situ spatial transcriptomics☆180Jun 26, 2026Updated last week
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Jun 26, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- Open Source eCommerce Platform☆11Apr 11, 2024Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Bayesian Segmentation of Spatial Transcriptomics Data☆207Jun 26, 2026Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆34Apr 9, 2026Updated 2 months ago
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 3, 2024Updated last year
- Python implementation of Monocle☆36Aug 21, 2025Updated 10 months ago
- Spot pseudo-Imager on top of histology☆51Dec 12, 2025Updated 6 months ago
- Training explaining basics of PostgreSQL performance tuning. See branches for a version in English☆13Aug 4, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- Interactive visualization of spatial omics data☆87Updated this week
- ☆70Jan 18, 2023Updated 3 years ago
- ☆11Jul 8, 2024Updated last year
- ☆21Jul 7, 2025Updated 11 months ago
- ☆12Sep 13, 2024Updated last year
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆49Oct 22, 2025Updated 8 months ago
- Tutorials for Squidpy☆35Jun 19, 2026Updated 2 weeks ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Jan 29, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆41Aug 23, 2023Updated 2 years ago
- ML-aided Query Optimizer☆17May 31, 2024Updated 2 years ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- A pipeline to transform images into valuable analysis items☆19Jun 19, 2026Updated 2 weeks ago
- Single-cell spatial omics analysis that makes you happy!☆69Jun 29, 2026Updated last week
- Compute the neighborhood consolidation matrix and identify SHRs☆14Jun 12, 2025Updated last year
- Implementation of multiplex Leiden for analysis of spatial omics data☆22May 7, 2026Updated last month