FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.
☆13Dec 6, 2025Updated 3 months ago
Alternatives and similar repositories for FastReseg
Users that are interested in FastReseg are comparing it to the libraries listed below
Sorting:
- Hosted version of cellxgene☆22Feb 26, 2026Updated last week
- QuPath extension to interactively align images☆26Aug 7, 2025Updated 6 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆17Sep 19, 2025Updated 5 months ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated 10 months ago
- ☆27Jan 27, 2026Updated last month
- ☆44Feb 13, 2026Updated 3 weeks ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆97Updated this week
- ☆22Aug 17, 2023Updated 2 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆153Feb 26, 2026Updated last week
- ☆30Jan 22, 2025Updated last year
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆46Oct 22, 2025Updated 4 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Feb 6, 2026Updated last month
- Interoperability between SpatialData and the Xenium Explorer☆25Jul 31, 2024Updated last year
- Interactive visualization of spatial omics data☆76Updated this week
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Mar 7, 2025Updated last year
- Bayesian Segmentation of Spatial Transcriptomics Data☆202Dec 10, 2024Updated last year
- ☆10Jul 10, 2024Updated last year
- Tutorials for Squidpy☆34Dec 18, 2025Updated 2 months ago
- ☆71Jan 18, 2023Updated 3 years ago
- A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues☆32Jan 29, 2025Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆120Feb 27, 2026Updated last week
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated 9 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Dec 11, 2023Updated 2 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆13Updated this week
- Implementation of multiplex Leiden for analysis of spatial omics data☆17Feb 2, 2026Updated last month
- This is an R package to retrieve data from Open Target☆15Jul 25, 2025Updated 7 months ago
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 4 years ago
- Unbiased single-cell transcriptomic data cell type identification☆14May 7, 2024Updated last year
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 2 years ago
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 7 months ago
- Single-cell spatial omics analysis that makes you happy!☆52Updated this week
- CAST package☆42Oct 26, 2024Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- Starter repo for regl explorations☆10May 26, 2017Updated 8 years ago
- ☆15Mar 13, 2024Updated last year
- ☆11Jul 8, 2024Updated last year
- ☆10Jan 17, 2023Updated 3 years ago
- Training explaining basics of PostgreSQL performance tuning. See branches for a version in English☆13Aug 4, 2025Updated 7 months ago