Nanostring-Biostats / FastResegLinks
FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.
☆12Updated 2 weeks ago
Alternatives and similar repositories for FastReseg
Users that are interested in FastReseg are comparing it to the libraries listed below
Sorting:
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- ☆10Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated last week
- ☆85Updated last week
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆29Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆105Updated last week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆23Updated this week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆33Updated 5 months ago
- ☆28Updated this week
- ☆15Updated 3 years ago
- ☆24Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated last month
- comseg☆24Updated 10 months ago
- Spatial analysis of FISH data☆34Updated 7 months ago
- ☆40Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- ☆55Updated 2 weeks ago
- ☆42Updated 2 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated 3 months ago
- A public MuSpAn page for community discussions and issue reporting.☆18Updated 2 months ago
- Code used to benchmark Xenium☆72Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Updated 11 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Python package for reading imaging mass cytometry (IMC) files☆17Updated last week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 8 months ago
- CAST package☆41Updated last year