SlideJ: an ImageJ plugin for WSI processing
β17Nov 7, 2019Updated 6 years ago
Alternatives and similar repositories for SlideJ
Users that are interested in SlideJ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- β11Mar 1, 2026Updated 8 months ago
- πΈ Breast epithelium segmentation through IHC-guided supervisionβ11Apr 23, 2024Updated 2 years ago
- Generating tool descriptors from bio.toolsβ10Jun 13, 2018Updated 8 years ago
- Various scripts written for image analysis utilitiesβ12Oct 3, 2025Updated last year
- Converts whole slide images to DICOM formatβ22Oct 9, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform β’ AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- π¬ Code-free deep segmentation for computational pathologyβ58Jun 14, 2024Updated 2 years ago
- Pytorch implementation of Self Attentive Adversarial Stain Normalization (SAASN).β14Feb 13, 2023Updated 3 years ago
- Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Pathologβ¦β17Oct 15, 2021Updated 5 years ago
- Cytomine Java clientβ16Apr 5, 2025Updated last year
- Tutorial for slideio packageβ15Oct 4, 2026Updated 3 weeks ago
- QuPath extension to interactively align imagesβ30Aug 7, 2025Updated last year
- slideToolkit: a free toolset for analyzing full size virtual histology slidesβ11May 22, 2024Updated 2 years ago
- Resources for people interested in zooming technology.β39May 15, 2017Updated 9 years ago
- This is a multithread crawler for ptt-searchβ11Aug 28, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repository of the paper: "Histo-Miner: Tissue Features Extraction With Deep Learning from H&E Images of Squamous Cell Carcinoma Skin Cancβ¦β19Aug 7, 2026Updated 2 months ago
- β27Oct 18, 2026Updated 2 weeks ago
- β21Oct 24, 2020Updated 6 years ago
- A Python toolkit for pathology image analysis algorithms.β491Oct 22, 2026Updated last week
- β11Jun 9, 2019Updated 7 years ago
- GLSL Shaders on OpenSeadragon zoomable tiles or any other image viaWebGLβ40Mar 13, 2023Updated 3 years ago
- tools and notes for long reads analysisβ24Mar 31, 2025Updated last year
- OUT-OF-DATE! The new book is at https://bioimagebook.github.ioβ21Jan 2, 2017Updated 9 years ago
- RNAseq pipeline based on snakemakeβ27Mar 8, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean β’ AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- FinTagging: an LLM-ready benchmark for XBRL tagging of financial reports (arXiv:2505.20650)β14Oct 8, 2026Updated 3 weeks ago
- Prediction of HER2 overexpression status and IHC score as seen in "Predicting the HER2 status in esophageal cancer from tissue microarrayβ¦β12Aug 19, 2022Updated 4 years ago
- Coincides with blogpost for using geojson and shapelyβ32Nov 16, 2020Updated 5 years ago
- QuPath - Open-source bioimage analysis for researchβ51Updated this week
- β12Jul 3, 2023Updated 3 years ago
- Materials and assignments for Coursera Course: data structures and algorithmsβ15Sep 5, 2019Updated 7 years ago
- Software used by the AGH team during the ANHIR challenge.β28Dec 14, 2020Updated 5 years ago
- β21Aug 10, 2026Updated 2 months ago
- β11Oct 21, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/β29Dec 3, 2025Updated 10 months ago
- β32May 19, 2026Updated 5 months ago
- PAthological QUpath Obsession - QuPath and Python conversationsβ137Apr 30, 2026Updated 6 months ago
- I use this repository to back up and track configuration files on my Raspberry Pi. Includes a personal web server, Upside-Down-Ternet WiFβ¦β12Sep 16, 2017Updated 9 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.β80Jun 21, 2022Updated 4 years ago
- Self-Supervised Representation Learning (CDpath ICCV 2021)β13Dec 1, 2022Updated 3 years ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image filesβ37Apr 29, 2024Updated 2 years ago