SlideJ: an ImageJ plugin for WSI processing
☆16Nov 7, 2019Updated 6 years ago
Alternatives and similar repositories for SlideJ
Users that are interested in SlideJ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Converts whole slide images to DICOM format☆22Oct 9, 2025Updated 8 months ago
- Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Patholog…☆17Oct 15, 2021Updated 4 years ago
- Resources for people interested in zooming technology.☆39May 15, 2017Updated 9 years ago
- Pytorch implementation of Self Attentive Adversarial Stain Normalization (SAASN).☆14Feb 13, 2023Updated 3 years ago
- slideToolkit: a free toolset for analyzing full size virtual histology slides☆11May 22, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Multi-scale CNNs for histopathology image segmentation☆11Feb 28, 2021Updated 5 years ago
- QuPath extension to interactively align images☆29Aug 7, 2025Updated 10 months ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated last year
- Reconstructing Electron Microscopic(EM) image stacks of mouse brain tissue requires many hours of manual annotation and proofreading, whi…☆12Aug 29, 2017Updated 8 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Jul 29, 2025Updated 11 months ago
- ☆19Jan 27, 2025Updated last year
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆29Dec 3, 2025Updated 7 months ago
- Histopathology Feature Extractors (2024)☆14Jun 14, 2024Updated 2 years ago
- ☆11Oct 21, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- OUT-OF-DATE! The new book is at https://bioimagebook.github.io☆21Jan 2, 2017Updated 9 years ago
- ☆11Jul 3, 2023Updated 3 years ago
- ☆12Mar 1, 2026Updated 4 months ago
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- Bio-Formats image file format to raw format converter☆109Updated this week
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 4 years ago
- Self-Supervised Representation Learning (CDpath ICCV 2021)☆13Dec 1, 2022Updated 3 years ago
- Strip potentially identifying label and macro images from Aperio SVS whole slide image files☆37Apr 29, 2024Updated 2 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆138Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ⚡ Open-source software for deep learning-based digital pathology☆142Jun 14, 2024Updated 2 years ago
- A simple effort from me to make a Python bootcamp 3 Days for beginners who are enthusiastic about Machine Learning.☆31Feb 7, 2019Updated 7 years ago
- Software used by the AGH team during the ANHIR challenge.☆28Dec 14, 2020Updated 5 years ago
- A Python toolkit for pathology image analysis algorithms.☆474Jun 22, 2026Updated last week
- ☆31Jun 9, 2025Updated last year
- source code of Inter-MIL: self-interactive multi-instance learning☆17Aug 1, 2023Updated 2 years ago
- ImageJ/Fiji plugin for consistent elastic registration of 2D images☆25Jun 14, 2022Updated 4 years ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆21Dec 27, 2023Updated 2 years ago
- Easy two-way databinding with Blaze☆12Aug 7, 2017Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Loris docker image suitable for development environments☆16Sep 15, 2023Updated 2 years ago
- Accounts Templates wrapped for Famo.us☆21Dec 13, 2015Updated 10 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆327Apr 13, 2026Updated 2 months ago
- Ubuntu based image with geodjango binary dependencies☆10Nov 17, 2025Updated 7 months ago
- three.js server side rendering (renderfarm.js client lib)☆23Jan 13, 2022Updated 4 years ago
- Official code for the paper "A Good Feature Extractor Is All You Need for Weakly Supervised Pathology Slide Classification"☆18Aug 17, 2024Updated last year
- Pathology image classifier architecture☆13Jan 20, 2020Updated 6 years ago