Alternatives and similar repositories for SlideJ:

Users that are interested in SlideJ are comparing it to the libraries listed below

• choosehappy / QuickAnnotator
  An open-source digital pathology based rapid image annotation tool
  ☆76Updated this week
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆117Updated this week
• DigitalSlideArchive / HistomicsUI
  A Girder plugin for pathology image annotations and analysis.
  ☆67Updated this week
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆23Updated last month
• maragraziani / interpretAI_DigiPath
  Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
  ☆21Updated 3 years ago
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆131Updated 9 months ago
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆63Updated 4 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆103Updated 2 weeks ago
• zhaoxuanma / Deeplearning-digital-pathology
  Full package for applying deep learning to virtual slides.
  ☆68Updated 6 years ago
• Booritas / slideio
  ☆62Updated 2 weeks ago
• SBU-BMI / quip_distro
  ☆32Updated 10 months ago
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆30Updated 3 months ago
• andreped / NoCodeSeg
  🔬 Code-free deep segmentation for computational pathology
  ☆53Updated 9 months ago
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆25Updated 2 months ago
• mstritt / orbit-image-analysis
  A versatile image analysis software for biological image-based quantification using machine learning, especially for whole slide imaging.
  ☆60Updated 3 years ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆31Updated 4 years ago
• serrob23 / falsecolor
  FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…
  ☆30Updated 3 years ago
• huangzhii / IMPRESS
  ☆19Updated 2 years ago
• pearcetm / svs-deidentifier
  Strip potentially identifying label and macro images from Aperio SVS whole slide image files
  ☆31Updated 10 months ago
• choosehappy / CohortFinder
  Intelligent data partitioning using quality control metrics
  ☆18Updated 4 months ago
• John-P / wsic
  Whole Slide image (WSI) conversion for brightfield histology images
  ☆36Updated 3 weeks ago
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆39Updated last month
• SarderLab / Histo-cloud
  ☆21Updated 3 weeks ago
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆31Updated last month
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆34Updated last year
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆36Updated this week
• DigitalSlideArchive / HistomicsStream
  A whole-slide image reader for TensorFlow
  ☆23Updated 5 months ago
• labsyspharm / orion-crc
  ☆14Updated 11 months ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆68Updated 8 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆81Updated 8 months ago