SlideJ: an ImageJ plugin for WSI processing
☆16Nov 7, 2019Updated 6 years ago
Alternatives and similar repositories for SlideJ
Users that are interested in SlideJ are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Converts whole slide images to DICOM format☆22Oct 9, 2025Updated 8 months ago
- Official code for "Improving Self-supervised Learning with Hardness-aware Dynamic Curriculum Learning: An Application to Digital Patholog…☆17Oct 15, 2021Updated 4 years ago
- Resources for people interested in zooming technology.☆39May 15, 2017Updated 9 years ago
- Pytorch implementation of Self Attentive Adversarial Stain Normalization (SAASN).☆14Feb 13, 2023Updated 3 years ago
- slideToolkit: a free toolset for analyzing full size virtual histology slides☆11May 22, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Multi-scale CNNs for histopathology image segmentation☆11Feb 28, 2021Updated 5 years ago
- QuPath extension to interactively align images☆28Aug 7, 2025Updated 10 months ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated last year
- A pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).☆36Updated this week
- Reconstructing Electron Microscopic(EM) image stacks of mouse brain tissue requires many hours of manual annotation and proofreading, whi…☆12Aug 29, 2017Updated 8 years ago
- SlideRunner is a tool for massive cell annotations in whole slide images☆80Jul 29, 2025Updated 10 months ago
- tools and notes for long reads analysis☆23Mar 31, 2025Updated last year
- ☆19Jan 27, 2025Updated last year
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆28Dec 3, 2025Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆24Jan 12, 2026Updated 5 months ago
- Histopathology Feature Extractors (2024)☆14Jun 14, 2024Updated 2 years ago
- ☆11Oct 21, 2023Updated 2 years ago
- GLSL Shaders on OpenSeadragon zoomable tiles or any other image viaWebGL☆40Mar 13, 2023Updated 3 years ago
- OUT-OF-DATE! The new book is at https://bioimagebook.github.io☆21Jan 2, 2017Updated 9 years ago
- ☆11Jul 3, 2023Updated 2 years ago
- Materials and assignments for Coursera Course: data structures and algorithms☆15Sep 5, 2019Updated 6 years ago
- ☆11Jun 9, 2019Updated 7 years ago
- ☆12Mar 1, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- Bio-Formats image file format to raw format converter☆109Updated this week
- QuPath - Open-source bioimage analysis for research☆51Updated this week
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Jun 21, 2022Updated 3 years ago
- Self-Supervised Representation Learning (CDpath ICCV 2021)☆13Dec 1, 2022Updated 3 years ago
- The official deployment of the Digital Slide Archive and HistomicsTK.☆137Updated this week
- ⚡ Open-source software for deep learning-based digital pathology☆142Jun 14, 2024Updated last year
- Software used by the AGH team during the ANHIR challenge.☆28Dec 14, 2020Updated 5 years ago
- For those thoughts you want to reflect on alone, lay back on the chaise and relax.☆47May 22, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆31Jun 9, 2025Updated last year
- source code of Inter-MIL: self-interactive multi-instance learning☆17Aug 1, 2023Updated 2 years ago
- Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…☆21Dec 27, 2023Updated 2 years ago
- Easy two-way databinding with Blaze☆12Aug 7, 2017Updated 8 years ago
- ☆14Mar 28, 2019Updated 7 years ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆58May 8, 2024Updated 2 years ago
- Accounts Templates wrapped for Famo.us☆21Dec 13, 2015Updated 10 years ago