qupath / qupath-extension-instanseg
The official QuPath extension for InstanSeg
☆11Updated this week
Alternatives and similar repositories for qupath-extension-instanseg:
Users that are interested in qupath-extension-instanseg are comparing it to the libraries listed below
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆14Updated 2 months ago
- QuPath extension to interactively align images☆21Updated 2 months ago
- Piecewise alignment for layers of mosaics☆23Updated 2 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆49Updated 2 weeks ago
- ☆30Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- Transfer trained StarDist models across imaging modalities☆2Updated 4 months ago
- ☆24Updated last month
- QuPath extension for Cellsparse☆18Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- QuPath extension to run StarDist nucleus detection☆37Updated last week
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- Microsopic Image Analyzer (MIA)☆29Updated 10 months ago
- ☆22Updated last year
- ☆28Updated this week
- Framework for image and flow cytometry analysis☆12Updated 3 weeks ago
- ☆20Updated 10 months ago
- version 1 scripts for CODA☆41Updated 9 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆22Updated 10 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆50Updated 11 months ago
- Image registration (alignment) software for large microscopy images☆22Updated last year
- Integrated pipeline for multiplexed image analysis☆80Updated 3 months ago
- ☆17Updated 10 months ago
- ImgLib2 RealTransform brought to QuPath☆21Updated 3 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆38Updated 7 months ago
- Interactive visualization of spatial omics data☆48Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆18Updated 6 months ago