The official QuPath extension for InstanSeg
☆29Jul 2, 2026Updated 3 weeks ago
Alternatives and similar repositories for qupath-extension-instanseg
Users that are interested in qupath-extension-instanseg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆17Feb 6, 2026Updated 5 months ago
- QuPath extension to run StarDist nucleus detection☆48Jun 25, 2026Updated 3 weeks ago
- QuPath extension to interactively align images☆29Aug 7, 2025Updated 11 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆94Jul 6, 2026Updated 2 weeks ago
- QuPath documentation☆22Mar 2, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ImgLib2 RealTransform brought to QuPath☆33Mar 12, 2026Updated 4 months ago
- ☆231Feb 4, 2026Updated 5 months ago
- Template to help create a new QuPath extension☆21Apr 23, 2026Updated 3 months ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- QuPath extension for Segment Anything Model (SAM)☆136Feb 15, 2026Updated 5 months ago
- convert .kfb format whole slide images to .svs format image for further processing☆17Sep 19, 2020Updated 5 years ago
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆22Apr 3, 2026Updated 3 months ago
- A Comprehensive Evaluation of Histopathology Foundation Models for Ovarian Cancer Subtype Classification☆16Jan 31, 2025Updated last year
- PAthological QUpath Obsession - QuPath and Python conversations☆136Apr 30, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 9 months ago
- Processing of histological data for cytoarchitecture analyses.☆22Feb 20, 2025Updated last year
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆30Dec 3, 2025Updated 7 months ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆37Jun 25, 2026Updated 3 weeks ago
- Bio-Formats image file format to raw format converter☆109Jun 30, 2026Updated 3 weeks ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- ☆31Jan 19, 2026Updated 6 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Oct 30, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- GrandQC tool for tissue detection and quality control in pathology☆110Dec 27, 2025Updated 6 months ago
- Functional image processing☆17Oct 20, 2018Updated 7 years ago
- Inference code for HoVer-NeXt☆51Oct 26, 2025Updated 8 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆36Jun 24, 2026Updated last month
- A pipeline to transform images into valuable analysis items☆19Jul 17, 2026Updated last week
- Java library for scientific image computing☆16Feb 4, 2021Updated 5 years ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- [ISBI25] Fine-tuning of foundation models with LoRA for cytology classification☆30Mar 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆71Dec 2, 2025Updated 7 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Color Deconvolution for quantification of histological staining☆12Dec 18, 2018Updated 7 years ago
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆122May 22, 2026Updated 2 months ago
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆14Jul 6, 2026Updated 2 weeks ago
- Interactive visualization of spatial omics data☆87Jul 2, 2026Updated 3 weeks ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Mar 16, 2025Updated last year