ksugar / qupath-extension-sam
QuPath extension for Segment Anything Model (SAM)
☆88Updated 2 weeks ago
Related projects: ⓘ
- Virtual Alignment of pathoLogy Image Series☆117Updated 3 weeks ago
- PAthological QUpath Obsession - QuPath and Python conversations☆102Updated last month
- 🔬 Code-free deep segmentation for computational pathology☆50Updated 3 months ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆21Updated 3 weeks ago
- Pipeline for computational pathology☆31Updated 8 months ago
- ☆57Updated this week
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆64Updated 7 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆60Updated last week
- Python 3 library for the augmentation & normalization of H&E images☆50Updated 2 years ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆56Updated 2 months ago
- Tools to build deep learning pipelines.☆80Updated last week
- An open-source digital pathology based rapid image annotation tool☆74Updated 5 months ago
- Whole Slide image (WSI) conversion for brightfield histology images☆31Updated last month
- List of pathology feature extractors☆32Updated this week
- ⚡ Open-source software for deep learning-based digital pathology☆121Updated 3 months ago
- ☆15Updated this week
- multimodal whole slide image registration in a graph structure☆76Updated 2 months ago
- Cloud-based data annotation tools for biological images☆73Updated 7 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆75Updated 2 months ago
- Coincides with blogpost for using geojson and shapely☆28Updated 3 years ago
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆89Updated this week
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆91Updated last week
- Clinical Histopathology Imaging Evaluation Foundation Model☆80Updated this week
- Re-stained whole slide image alignment☆30Updated 11 months ago
- Image-translation-assisted segmentation in 3D☆24Updated 2 years ago
- ☆18Updated 10 months ago
- Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…☆36Updated 4 months ago
- HoVer-Net inference code for simultaneous nuclear segmentation and classification☆63Updated last year
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated last year
- A pipeline to segment tissue from the background in histological images☆63Updated last year