ksugar / qupath-extension-samLinks
QuPath extension for Segment Anything Model (SAM)
☆113Updated 4 months ago
Alternatives and similar repositories for qupath-extension-sam
Users that are interested in qupath-extension-sam are comparing it to the libraries listed below
Sorting:
- PAthological QUpath Obsession - QuPath and Python conversations☆118Updated 6 months ago
- ☆172Updated last week
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆24Updated 2 weeks ago
- Virtual Alignment of pathoLogy Image Series☆166Updated 3 weeks ago
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆72Updated last year
- Codebase for "A Foundation Model for Cell Segmentation"☆98Updated last month
- 🔬 Code-free deep segmentation for computational pathology☆53Updated last year
- ☆34Updated 3 months ago
- Segment Anything for Histopathology☆34Updated last month
- Pipeline for computational pathology☆37Updated last year
- GrandQC tool for tissue detection and quality control in pathology☆53Updated 4 months ago
- multimodal whole slide image registration in a graph structure☆87Updated last year
- Whole Slide image (WSI) conversion for brightfield histology images☆37Updated 3 weeks ago
- ☆26Updated 2 months ago
- An open-source digital pathology based rapid image annotation tool☆79Updated this week
- A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.☆104Updated 7 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆74Updated last week
- Tools to build deep learning pipelines.☆104Updated 8 months ago
- Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)☆79Updated last year
- Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, …☆205Updated this week
- Analysis of 3D pathology samples using weakly supervised AI - Cell☆102Updated 5 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated 5 months ago
- Coincides with blogpost for using geojson and shapely☆32Updated 4 years ago
- Re-stained whole slide image alignment☆33Updated last year
- Transfer trained StarDist models across imaging modalities☆3Updated 9 months ago
- Piecewise alignment for layers of mosaics☆25Updated last week
- Encoder-Decoder Cell and Nuclei segmentation models☆93Updated 2 months ago
- Image-translation-assisted segmentation in 3D☆26Updated 3 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆68Updated 5 months ago
- ⚡ Open-source software for deep learning-based digital pathology☆133Updated last year