QuPath extension for Segment Anything Model (SAM)
☆134Feb 15, 2026Updated 3 months ago
Alternatives and similar repositories for qupath-extension-sam
Users that are interested in qupath-extension-sam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Segment Anything Model API☆113Feb 15, 2026Updated 3 months ago
- QuPath extension for Cellsparse☆19May 6, 2025Updated last year
- QuPath extension to run StarDist nucleus detection☆48Jul 2, 2025Updated 10 months ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆28Dec 3, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- QuPath extension to interactively align images☆28Aug 7, 2025Updated 9 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆134Apr 30, 2026Updated 3 weeks ago
- 🔬 Code-free deep segmentation for computational pathology☆57Jun 14, 2024Updated last year
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆91Feb 5, 2026Updated 3 months ago
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated 3 months ago
- Trained models for use with QuPath☆16Aug 7, 2021Updated 4 years ago
- ImgLib2 RealTransform brought to QuPath☆31Mar 12, 2026Updated 2 months ago
- Template to help create a new QuPath extension☆21Apr 23, 2026Updated last month
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆85Jul 11, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated 9 months ago
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated 4 months ago
- ☆220Feb 4, 2026Updated 3 months ago
- Python code to read/write .annotation files from Halo☆10Feb 19, 2025Updated last year
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Feb 5, 2026Updated 3 months ago
- QuPath - Open-source bioimage analysis for research☆1,367Updated this week
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Dec 9, 2025Updated 5 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Dec 6, 2022Updated 3 years ago
- Tools for computational pathology☆452Apr 14, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Efficient data structures and IO for whole slide image analysis☆27Updated this week
- QuPath TIL classifier for Melanoma on HE slides☆10Jul 24, 2019Updated 6 years ago
- An open-source digital pathology based rapid image annotation tool☆90Updated this week
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆270Dec 23, 2023Updated 2 years ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆22Nov 24, 2025Updated 6 months ago
- Command-line client for Fractal☆49Updated this week
- QuPath documentation☆22Mar 2, 2026Updated 2 months ago
- CellViT: Vision Transformers for Precise Cell Segmentation and Classification☆382Jul 23, 2025Updated 10 months ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆34Jun 22, 2025Updated 11 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Hibou: Foundational Models for Pathology☆78Oct 23, 2024Updated last year
- ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis☆23Apr 23, 2026Updated last month
- Microsnoop: A generalist tool for microscopy image representation☆13Feb 27, 2025Updated last year
- Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data☆607May 16, 2025Updated last year
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- ☆71Sep 23, 2024Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆47Dec 4, 2025Updated 5 months ago