niaid / sitk-ibexLinks
Aligning images acquired with the IBEX microscopy imaging technique
☆18Updated this week
Alternatives and similar repositories for sitk-ibex
Users that are interested in sitk-ibex are comparing it to the libraries listed below
Sorting:
- QuPath extension to interactively align images☆26Updated 4 months ago
- ☆24Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆96Updated last year
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- ☆30Updated last month
- Algorithmic and Utility Extensions for the Imaris Program☆19Updated 2 weeks ago
- QuPath extension for Cellsparse☆19Updated 7 months ago
- Raw format to OME-TIFF converter☆56Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last week
- ☆32Updated 4 months ago
- FalseColor Python is a rapid digital staining module designed for translating two-channel fluorescence images (i.e. a nuclear and cytopla…☆30Updated 4 years ago
- Tools for accessing open data sets published by the Allen Institute for Brain Sciences☆14Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Multiple-choice microscopy pipeline☆144Updated 3 weeks ago
- ☆35Updated last year
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- QuPath extension to run StarDist nucleus detection☆47Updated 5 months ago
- The official QuPath extension for InstanSeg☆28Updated last month
- Bio-Formats image file format to raw format converter☆102Updated last week
- Cloud-based data annotation tools for biological images☆82Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆126Updated 3 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- GPU-accelerated image processing in QuPath☆16Updated 4 years ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 7 months ago
- Microsopic Image Analyzer (MIA)☆28Updated 3 months ago