Aligning images acquired with the IBEX microscopy imaging technique
☆20Jun 28, 2026Updated 2 months ago
Alternatives and similar repositories for sitk-ibex
Users that are interested in sitk-ibex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Algorithmic and Utility Extensions for the Imaris Program☆21Jul 26, 2026Updated last month
- ☆15Aug 19, 2026Updated last week
- IEEE ISBI 2020 SimpleITK Tutorial☆13Mar 7, 2024Updated 2 years ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 5 months ago
- ☆26Jun 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Analysis of smFISH data☆12Aug 27, 2018Updated 8 years ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated last month
- A pipeline to transform images into valuable analysis items☆19Aug 19, 2026Updated last week
- A setup script to generate a Python Wheels☆18Jul 30, 2026Updated 3 weeks ago
- ☆13Feb 27, 2024Updated 2 years ago
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Aug 22, 2024Updated 2 years ago
- An R package for the analysis and interpretation of cell migration tracks.☆15Sep 19, 2025Updated 11 months ago
- Use Napari Viewer to display CZI images☆11May 25, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- daoSPIM microscope project: software and hardware☆12Jul 6, 2023Updated 3 years ago
- ☆13Apr 21, 2021Updated 5 years ago
- ☆23Mar 26, 2021Updated 5 years ago
- Tools for analyzing Slide-seq data☆32Oct 30, 2023Updated 2 years ago
- ThrustCurve.org third revision☆13Aug 19, 2026Updated last week
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Integrated pipeline for multiplexed image analysis☆108Aug 20, 2026Updated last week
- Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration☆126Aug 21, 2026Updated last week
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆80Aug 3, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆44May 20, 2026Updated 3 months ago
- A template to start an ITK Module☆13Nov 14, 2025Updated 9 months ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 5 years ago
- QuPath extension to interactively align images☆29Aug 7, 2025Updated last year
- Piecewise alignment for layers of mosaics☆61Aug 8, 2026Updated 3 weeks ago
- Histology Topography Cytometry Analysis Toolbox☆69Mar 23, 2026Updated 5 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆181Aug 7, 2026Updated 3 weeks ago
- AI-enabled Mouse Organ Segmentation☆15Jan 26, 2021Updated 5 years ago
- A two-hour introduction to data for Python *or* R.☆10Apr 24, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Jul 12, 2025Updated last year
- ☆11Nov 4, 2025Updated 9 months ago
- ☆17Mar 7, 2024Updated 2 years ago
- Coral Edge TPU compilable version of DeepLab V3☆14Jan 4, 2023Updated 3 years ago
- Scientific Dataset Quality Control and Data Exploration Tool☆26Updated this week
- ☆17Feb 23, 2024Updated 2 years ago
- ☆20Jun 30, 2026Updated last month