NHPatterson / napari-wsiregLinks
Whole slide image registration through wsireg in napari.
☆13Updated 2 years ago
Alternatives and similar repositories for napari-wsireg
Users that are interested in napari-wsireg are comparing it to the libraries listed below
Sorting:
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- Visualizing feature measurements on label images in napari☆10Updated 11 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- GIve easy, high-level access to ome-zarr fileset☆17Updated last month
- Image registration (alignment) software for large microscopy images☆25Updated last year
- A relabeling tool for tiled segmentation with Dask☆16Updated 9 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 months ago
- A minimal Python package for reading OME-Zarr (meta)data☆31Updated 2 weeks ago
- Multiple file format reading directly into napari using pure Python☆36Updated 11 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 7 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated last week
- ☆12Updated last year
- QuPath extension for Cellsparse☆18Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated last month
- Tool for precise, interactive, fast and scalable FISH spot detection☆49Updated 4 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 6 months ago
- Raw format to OME-TIFF converter☆53Updated 3 weeks ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 7 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated last week
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- ☆24Updated 2 years ago
- Command-line client for Fractal☆46Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 7 months ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Interactive visualization of spatial omics data☆59Updated 2 weeks ago