NHPatterson / napari-wsiregLinks
Whole slide image registration through wsireg in napari.
☆12Updated 2 years ago
Alternatives and similar repositories for napari-wsireg
Users that are interested in napari-wsireg are comparing it to the libraries listed below
Sorting:
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Visualizing feature measurements on label images in napari☆10Updated last year
- A relabeling tool for tiled segmentation with Dask☆16Updated 11 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Raw format to OME-TIFF converter☆55Updated last week
- GIve easy, high-level access to ome-zarr fileset☆17Updated last month
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 months ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆11Updated 2 weeks ago
- A plugin to visualise 3D spatial single cell omics☆21Updated 3 months ago
- ☆12Updated last month
- Command-line client for Fractal☆46Updated this week
- Interactive visualization and sharing of cell tracking data in the browser☆38Updated 2 weeks ago
- ☆32Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- QuPath extension for Cellsparse☆19Updated 4 months ago
- ☆39Updated 3 weeks ago
- A multi-dimensional spatial image data structure for scientific Python.☆42Updated last month
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆18Updated 4 months ago
- A minimal dependency napari plugin giving access to scikit-image functions☆18Updated 2 weeks ago
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- ☆24Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- A napari plugin for zarr backed OME-NGFF images☆37Updated 2 weeks ago
- A minimal Python package for reading and validating OME-Zarr (meta)data☆33Updated this week
- Browse your OMERO database from within napari.☆38Updated 2 weeks ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- Commands and Classes for interfacing between Imaris and Fiji☆12Updated 11 months ago
- Multiple file format reading directly into napari using pure Python☆37Updated last year