NHPatterson / napari-wsireg
Whole slide image registration through wsireg in napari.
☆13Updated 2 years ago
Alternatives and similar repositories for napari-wsireg:
Users that are interested in napari-wsireg are comparing it to the libraries listed below
- Visualizing feature measurements on label images in napari☆10Updated 9 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- GIve easy, high-level access to ome-zarr fileset☆14Updated this week
- Guides and code for 3D nuclear instance segmentation☆22Updated last week
- A module with convenience functions for writing Python code that interacts with OMERO.☆44Updated last week
- A relabeling tool for tiled segmentation with Dask☆16Updated 7 months ago
- Development of PICASSO plugin for napari☆16Updated 2 years ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆12Updated 2 weeks ago
- A writer and reader for NGFF OME-Zarr datasets☆14Updated 3 years ago
- QuPath extension for Cellsparse☆18Updated this week
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆22Updated last month
- A napari plugin for zarr backed OME-NGFF images☆33Updated last month
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- Command-line client for Fractal☆45Updated last week
- A minimal dependency napari plugin giving access to scikit-image functions☆17Updated last week
- A plugin to visualise 3D spatial single cell omics☆22Updated last year
- Basic example of using OME-Zarr in a Nextflow pipeline☆16Updated 5 months ago
- Browse your OMERO database from within napari.☆36Updated this week
- Multiple file format reading directly into napari using pure Python☆35Updated 9 months ago
- Piecewise alignment for layers of mosaics☆24Updated 3 weeks ago
- A minimal Python package for reading OME-Zarr (meta)data☆25Updated 3 weeks ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- Raw format to OME-TIFF converter☆51Updated 2 months ago
- ☆12Updated last year
- MethodsJ2☆14Updated 3 years ago
- ☆23Updated last year
- Interactive visualization of spatial omics data☆53Updated last week
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago