huangch / qustLinks
QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
☆32Updated 6 months ago
Alternatives and similar repositories for qust
Users that are interested in qust are comparing it to the libraries listed below
Sorting:
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 3 weeks ago
- ☆36Updated 2 years ago
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- ☆203Updated last week
- Integrated pipeline for multiplexed image analysis☆100Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆63Updated last year
- multimodal whole slide image registration in a graph structure☆97Updated last year
- QuPath extension to interactively align images☆26Updated 4 months ago
- The official QuPath extension for InstanSeg☆29Updated 2 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Multiple-choice microscopy pipeline☆144Updated last month
- An introduction to deepcell and deep learning☆155Updated last year
- Interactive visualization of spatial omics data☆73Updated last week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- ☆30Updated last month
- Accessible and interoperable whole slide image analysis☆171Updated last week
- QuPath extension to run StarDist nucleus detection☆48Updated 5 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆84Updated 3 weeks ago
- A pipeline to transform images into valuable analysis items☆17Updated 6 months ago
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- comseg☆24Updated 10 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- ☆91Updated last month
- CODEX data processing code☆12Updated 5 months ago
- Deep learning based spot detection for FISH images.☆26Updated 3 months ago
- ☆59Updated 10 months ago
- QuPath extension for Cellsparse☆19Updated 7 months ago
- Spatial Single-Cell Analysis Toolkit☆105Updated last week
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆16Updated 6 months ago