Alternatives and similar repositories for scRNABatchQC

Users that are interested in scRNABatchQC are comparing it to the libraries listed below

• BaderLab / AgingMouseBrainCCInx
  Predicted cell-cell interactions of the aging mouse brain
  ☆20Updated 5 years ago
• jdime / scRNAseq_cell_cluster_labeling
  Scripts to run and benchmark scRNA-seq cell cluster labeling methods
  ☆48Updated 5 years ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 6 years ago
• theislab / enrichment_analysis_celltype
  Cell type enrichment analysis using gene signatures and cluster markers
  ☆9Updated 7 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆23Updated 5 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated last year
• quon-titative-biology / scAlign
  A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…
  ☆38Updated 3 years ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆26Updated 5 years ago
• mruffalo / sc-rna-seq-pipeline
  ☆22Updated 5 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆28Updated last year
• yuvallb / CaSTLe
  Classification of Single cells by Transfer Learning
  ☆10Updated 4 years ago
• lkmklsmn / insct
  scRNAseq integration with triplet neural networks
  ☆41Updated 2 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆23Updated 5 years ago
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Updated 6 months ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆44Updated 11 months ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated last year
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• epurdom / clusterExperiment
  R package of techniques for comparing clusterings of single-cell sequencing data
  ☆39Updated last year
• const-ae / transformGamPoi-Paper
  ☆27Updated last year
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 6 years ago
• uc-bd2k / GREP2
  GEO RNA-seq Experiments Processing Pipeline
  ☆21Updated 5 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• PYangLab / Cepo
  Uncovering cell identity genes using differential stability of expression in single cells.
  ☆11Updated last year
• linnarsson-lab / cytograph
  Algorithms for single-cell analysis
  ☆29Updated 4 years ago
• icbi-lab / Immunophenogram
  ☆40Updated 7 years ago
• wkl1990 / Illumina450K-methylation
  From IDAT to beta.
  ☆25Updated 7 years ago
• SpatialTranscriptomicsResearch / st_viewer
  A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets
  ☆14Updated 4 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆21Updated last year