Alternatives and similar repositories for bioformats2raw

Users that are interested in bioformats2raw are comparing it to the libraries listed below

• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated 3 weeks ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆162Updated this week
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆100Updated last year
• peng-lab / BaSiCPy
  ☆92Updated 3 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated 2 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆153Updated last week
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 9 months ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆70Updated last year
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆17Updated last year
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆112Updated last month
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆48Updated this week
• piximi / piximi
  A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.
  ☆38Updated 2 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 3 months ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆31Updated last week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆90Updated 2 weeks ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆35Updated 5 months ago
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆35Updated 2 months ago
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆12Updated 2 years ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆221Updated 2 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 4 months ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆13Updated 6 months ago
• JaneliaSciComp / multifish
  EASI-FISH analysis pipeline for spatial transcriptomics
  ☆35Updated last year
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 3 years ago
• qupath / qubalab
  Lab for quantitative bioimage analysis experiments in Python
  ☆19Updated last week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated 2 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆27Updated 2 years ago
• KerenLab / CellSighter
  ☆37Updated 2 years ago