Bio-Formats image file format to raw format converter
☆103Feb 18, 2026Updated 2 weeks ago
Alternatives and similar repositories for bioformats2raw
Users that are interested in bioformats2raw are comparing it to the libraries listed below
Sorting:
- Raw format to OME-TIFF converter☆56Feb 18, 2026Updated 2 weeks ago
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆225Feb 23, 2026Updated last week
- Python project containing Ice remoting code for OMERO☆28Feb 17, 2026Updated 2 weeks ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆20Jan 19, 2026Updated last month
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Dec 4, 2025Updated 3 months ago
- ☆18Feb 24, 2026Updated last week
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated last month
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆155Feb 26, 2026Updated last week
- A minimal Zarr image viewer based on Viv.☆185Feb 26, 2026Updated last week
- Lazily load multiscale whole-slide images with openslide and dask☆34Dec 6, 2022Updated 3 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Nov 26, 2025Updated 3 months ago
- Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.☆336Feb 26, 2026Updated last week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 3 months ago
- A napari plugin for zarr backed OME-NGFF images☆45Updated this week
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆21Oct 22, 2025Updated 4 months ago
- GIve easy, high-level access to ome-zarr fileset☆22Sep 22, 2025Updated 5 months ago
- Quickly find the affine matrix mapping one image to another using manual correspondence points annotation☆22Aug 6, 2025Updated 6 months ago
- multimodal whole slide image registration in a graph structure☆100Jul 4, 2024Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆114Feb 25, 2026Updated last week
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated 2 weeks ago
- native Python dataclasses for the OME data model☆65Feb 12, 2026Updated 3 weeks ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Aug 8, 2025Updated 6 months ago
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- ☆21Updated this week
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated 7 months ago
- Cookiecutter for napari plugins☆71Nov 6, 2024Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆165Feb 19, 2026Updated 2 weeks ago
- Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data☆21Jan 9, 2026Updated last month
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Mar 13, 2023Updated 2 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆28Mar 14, 2025Updated 11 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆66Feb 26, 2026Updated last week
- Interface to the Bioformats Java library☆13Feb 17, 2026Updated 2 weeks ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆238Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E…☆414Updated this week
- ☆41Feb 13, 2026Updated 2 weeks ago
- ☆18Nov 25, 2025Updated 3 months ago
- ☆14May 17, 2024Updated last year