Alternatives and similar repositories for bioformats2raw

Users that are interested in bioformats2raw are comparing it to the libraries listed below

• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last week
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆96Updated last year
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆156Updated 3 months ago
• peng-lab / BaSiCPy
  ☆91Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated last week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆29Updated 3 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆145Updated last week
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆109Updated this week
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated last year
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆47Updated this week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆69Updated last year
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆12Updated 2 years ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated this week
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆217Updated this week
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated last month
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆33Updated last week
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year
• piximi / piximi
  A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.
  ☆36Updated 2 months ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆26Updated 2 years ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆19Updated 7 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆64Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆55Updated last week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆66Updated this week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆111Updated this week
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆83Updated last week
• mobie / mobie-viewer-fiji
  ☆41Updated this week
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆142Updated 5 months ago
• ome / omero-py
  Python project containing Ice remoting code for OMERO
  ☆27Updated last week