QuPath extension to run StarDist nucleus detection
☆48Jul 2, 2025Updated 8 months ago
Alternatives and similar repositories for qupath-extension-stardist
Users that are interested in qupath-extension-stardist are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QuPath extension to interactively align images☆26Aug 7, 2025Updated 7 months ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆89Feb 5, 2026Updated last month
- QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/☆28Dec 3, 2025Updated 3 months ago
- Trained models for use with QuPath☆16Aug 7, 2021Updated 4 years ago
- The official QuPath extension for InstanSeg☆29Jan 21, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- QuPath extension for Segment Anything Model (SAM)☆132Feb 15, 2026Updated last month
- 🔬 Code-free deep segmentation for computational pathology☆56Jun 14, 2024Updated last year
- ImgLib2 RealTransform brought to QuPath☆29Mar 12, 2026Updated 2 weeks ago
- QuPath TIL classifier for Melanoma on HE slides☆10Jul 24, 2019Updated 6 years ago
- Template to help create a new QuPath extension☆21Mar 19, 2026Updated last week
- A code for extracting annotated regions from whole slide images (WSIs) anotated in Aperio Imagescope☆12Jul 3, 2020Updated 5 years ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆15Feb 6, 2026Updated last month
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆27Dec 5, 2022Updated 3 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆133Mar 14, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆30Jan 19, 2026Updated 2 months ago
- Lab for quantitative bioimage analysis experiments in Python☆19Feb 16, 2026Updated last month
- ☆24Jun 6, 2023Updated 2 years ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- QuPath - Open-source bioimage analysis for research☆1,316Mar 19, 2026Updated last week
- Intelligent data partitioning using quality control metrics☆18Jun 10, 2025Updated 9 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆26May 16, 2025Updated 10 months ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 4 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆64Mar 14, 2024Updated 2 years ago
- An open-source digital pathology based rapid image annotation tool☆90Feb 26, 2026Updated last month
- Advanced steps of the OSCA book☆14Nov 19, 2025Updated 4 months ago
- ☆13Mar 20, 2021Updated 5 years ago
- ☆21Mar 11, 2026Updated 2 weeks ago
- Toolkit for large-scale whole-slide image processing.☆518Updated this week
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Nov 16, 2021Updated 4 years ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆319Dec 10, 2025Updated 3 months ago
- Python code used to train and evaluate segmentation networks for renal histopathological analysis☆15Jun 11, 2021Updated 4 years ago
- ☆17Mar 19, 2026Updated last week
- ☆61Dec 9, 2025Updated 3 months ago
- Import Data from the Cochrane Database of Systematic Reviews (CDSR)☆27Nov 27, 2025Updated 4 months ago