Alternatives and similar repositories for qupath-extension-stardist:

Users that are interested in qupath-extension-stardist are comparing it to the libraries listed below

• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆22Updated 3 months ago
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 6 months ago
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆23Updated 3 months ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆14Updated last week
• michaellee1 / CellSeg
  ☆22Updated last year
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆51Updated last month
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆25Updated 2 months ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆35Updated last year
• KerenLab / CellSighter
  ☆30Updated last year
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆67Updated 6 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated last month
• huangch / qust
  QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis
  ☆15Updated 3 months ago
• TheJacksonLaboratory / STQ
  Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
  ☆18Updated last month
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆67Updated last year
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆123Updated 2 weeks ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆23Updated last month
• MarkZaidi / QuASI
  List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
  ☆25Updated 2 years ago
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆84Updated this week
• ElementoLab / utag
  ☆34Updated 11 months ago
• ashleylk / CODA
  version 1 scripts for CODA
  ☆43Updated 10 months ago
• djimenezsanchez / NaroNet
  Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…
  ☆15Updated last year
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆14Updated 3 years ago
• nolanlab / TissueSchematics
  Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"
  ☆10Updated 2 years ago
• nolanlab / REDSEA
  ☆17Updated 11 months ago
• labsyspharm / minerva_analysis
  ☆26Updated last month
• BodenmillerGroup / readimc
  Python package for reading imaging mass cytometry (IMC) files
  ☆13Updated this week
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆40Updated 8 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆86Updated last month