clij / clupathLinks
GPU-accelerated image processing in QuPath
☆15Updated 3 years ago
Alternatives and similar repositories for clupath
Users that are interested in clupath are comparing it to the libraries listed below
Sorting:
- Microsopic Image Analyzer (MIA)☆28Updated last month
- QuPath extension for Cellsparse☆19Updated 4 months ago
- ☆27Updated 4 months ago
- Visualizing feature measurements on label images in napari☆10Updated last year
- Piecewise alignment for layers of mosaics☆29Updated 2 weeks ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated 11 months ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated last month
- The official QuPath extension for InstanSeg☆25Updated 3 weeks ago
- Raw format to OME-TIFF converter☆55Updated last week
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆68Updated 11 months ago
- 3D shape analysis using deep learning☆27Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 2 months ago
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆44Updated 4 months ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 5 years ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆24Updated 6 months ago
- GPU-accelerated Image Processing library for Python☆50Updated last week
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated last month
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 9 months ago
- StarDist plugin for napari☆39Updated last year
- Lab for quantitative bioimage analysis experiments in Python☆15Updated 7 months ago
- ☆31Updated 4 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆30Updated 3 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆19Updated 2 years ago
- ☆24Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week