clij / clupathLinks
GPU-accelerated image processing in QuPath
☆15Updated 3 years ago
Alternatives and similar repositories for clupath
Users that are interested in clupath are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆24Updated last week
- ☆26Updated 3 weeks ago
- QuPath extension for Cellsparse☆18Updated 3 weeks ago
- The official QuPath extension for InstanSeg☆17Updated 2 weeks ago
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 4 months ago
- QuPath extension to interactively align images☆23Updated this week
- Visualizing feature measurements on label images in napari☆10Updated 10 months ago
- Microsopic Image Analyzer (MIA)☆29Updated last year
- Transfer trained StarDist models across imaging modalities☆3Updated 8 months ago
- ☆23Updated last year
- Evaluating the quality of a cell segmentation method without reference.☆11Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 4 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 6 months ago
- ImgLib2 RealTransform brought to QuPath☆24Updated last month
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- Raw format to OME-TIFF converter☆53Updated last week
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆33Updated last year
- A relabeling tool for tiled segmentation with Dask☆16Updated 8 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 2 weeks ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- ☆32Updated 2 years ago
- MethodsJ2☆14Updated 3 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆27Updated 3 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- ☆31Updated 4 years ago
- StarDist plugin for napari☆38Updated 9 months ago