Alternatives and similar repositories for clupath

Users that are interested in clupath are comparing it to the libraries listed below

• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆24Updated last week
• tpecot / WholeSlideImageAnalysisWithQuPath
  ☆26Updated 3 weeks ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated 3 weeks ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆17Updated 2 weeks ago
• qupath / qubalab
  Lab for quantitative bioimage analysis experiments in Python
  ☆13Updated 4 months ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆23Updated this week
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 10 months ago
• MIAnalyzer / MIA
  Microsopic Image Analyzer (MIA)
  ☆29Updated last year
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 8 months ago
• michaellee1 / CellSeg
  ☆23Updated last year
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆11Updated last month
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆67Updated 8 months ago
• arjvik / QuPath-Scripting-Tools
  Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…
  ☆17Updated 4 years ago
• haesleinhuepf / human-eval-bia
  Benchmarking Large Language Models for Bio-Image Analysis Code Generation
  ☆23Updated 6 months ago
• BIOP / qupath-extension-warpy
  ImgLib2 RealTransform brought to QuPath
  ☆24Updated last month
• NHPatterson / napari-wsireg
  Whole slide image registration through wsireg in napari.
  ☆13Updated 2 years ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆53Updated last week
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• KerenLab / CellSighter
  ☆33Updated last year
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆16Updated 8 months ago
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆54Updated 2 weeks ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 3 months ago
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• ABIF-McGill / MethodsJ2
  MethodsJ2
  ☆14Updated 3 years ago
• kukionfr / VAMPIRE_open
  open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition
  ☆27Updated 3 years ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆45Updated this week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 4 months ago
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 9 months ago