Alternatives and similar repositories for MetaMarkers:

Users that are interested in MetaMarkers are comparing it to the libraries listed below

• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated last month
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• Terkild / CITE-seq_optimization
  Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
  ☆9Updated 4 years ago
• zijianni / scCB2
  R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data
  ☆10Updated last year
• Sun-lab / scRNAseq_pipelines
  pipelines to process scRNA-seq data
  ☆11Updated 4 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• powellgenomicslab / ascend
  Analysis of Single Cell Expression, Normalization and Differential expression
  ☆12Updated 5 years ago
• crazyhottommy / single-cell-DNAseq-notes
  ☆15Updated 2 years ago
• stephaniehicks / spatialexperiment-analysis
  repo to explore spatial data in R/Bioconductor and Python
  ☆12Updated 5 years ago
• lciernik / ANS_signature_scoring
  A gene expression signature scoring Python package.
  ☆12Updated 3 months ago
• haotian-zhuang / findPC
  Automatic selection of number of principal components
  ☆15Updated 2 years ago
• Pinlyu3 / CellAnn_shinyapp
  CellAnn
  ☆12Updated last year
• theislab / enrichment_analysis_celltype
  Cell type enrichment analysis using gene signatures and cluster markers
  ☆9Updated 7 years ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆19Updated 2 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆26Updated 4 years ago
• wgmao / NIFA
  Non-negative Independent Factor Analysis for single cell RNA-seq
  ☆11Updated 3 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated 11 months ago
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆16Updated 3 years ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 9 months ago
• mm-shah / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆13Updated 5 years ago
• leeprichman / ClonoCluster
  Combined clonality and transcriptome scRNAseq clustering method
  ☆11Updated 2 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 5 years ago
• soumelis-lab / ICELLNET
  ☆19Updated 10 months ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago