gillislab / MetaMarkers
Efficiently compute robust markers across single-cell datasets
☆11Updated 3 years ago
Alternatives and similar repositories for MetaMarkers:
Users that are interested in MetaMarkers are comparing it to the libraries listed below
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆9Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Gene Expression Decomposition and Integration☆16Updated 4 months ago
- ☆12Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆12Updated last month
- pipelines to process scRNA-seq data☆11Updated 4 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Updated 3 years ago
- Analysis of Single Cell Expression, Normalization and Differential expression☆12Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆10Updated last year
- ☆14Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 9 months ago
- ☆15Updated 2 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 7 years ago
- Functional Annotation for Single-Cell Transcriptomics☆10Updated 6 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 5 years ago
- ☆11Updated 5 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- ☆19Updated 8 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 6 months ago
- Tools for assessing clustering robustness☆22Updated this week
- A gene expression signature scoring Python package.☆10Updated last month
- ☆16Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 2 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Code for EpiMap data browser☆14Updated 7 months ago