ggonnella / gfapyLinks
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
☆71Updated 2 months ago
Alternatives and similar repositories for gfapy
Users that are interested in gfapy are comparing it to the libraries listed below
Sorting:
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆72Updated 6 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- ☆68Updated last week
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 4 months ago
- ☆67Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆85Updated last year
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Updated 9 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Pan-Genomic Matching Statistics☆55Updated last year
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆90Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Updated 6 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆96Updated 8 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆107Updated last week
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Assembled Genomes Compressor☆176Updated last year
- Python bindings to spoa☆22Updated last month
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 5 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 5 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Genome Pair Rapid Dotter☆67Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- ☆46Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago