ggonnella / gfapyLinks
Gfapy: a flexible and extensible software library for handling sequence graphs in Python
☆69Updated 10 months ago
Alternatives and similar repositories for gfapy
Users that are interested in gfapy are comparing it to the libraries listed below
Sorting:
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- ☆66Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆93Updated 4 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated this week
- ☆46Updated 5 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 5 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Python bindings to spoa☆21Updated last month
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆85Updated 9 months ago
- Assembled Genomes Compressor☆168Updated 9 months ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 2 months ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆72Updated 4 years ago
- ☆66Updated 2 weeks ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 2 months ago
- ☆100Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated 2 weeks ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Updated 5 years ago
- ☆34Updated 5 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- alignment to variation graph inducer☆149Updated 2 months ago
- Pan-Genomic Matching Statistics☆53Updated last year