vgteam / graph-genomics-reviewLinks
Pangenome graphs (review article on graph-based pangenomic methods)
☆72Updated 5 years ago
Alternatives and similar repositories for graph-genomics-review
Users that are interested in graph-genomics-review are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆82Updated last week
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Fast and accurate coordinate conversion between assemblies☆113Updated 3 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Pan-Genomic Matching Statistics☆52Updated last year
- ☆63Updated last week
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆72Updated last year
- Toolkit for calling structural variants using short or long reads☆106Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 4 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- ☆76Updated 5 years ago
- Structural variant caller☆54Updated 3 years ago
- PGR-TK: Pangenome Research Tool Kit☆100Updated last year
- This is an updated mirror of the original PacBio Read Simulator☆38Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A local-haplotagging-based small and structural variant caller☆78Updated 2 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- Data from the Human PanGenomics Project☆60Updated 4 years ago
- ☆48Updated last year
- A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043☆72Updated 11 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Structural variant caller for real-time long-read sequencing data☆56Updated 2 years ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 6 months ago
- ☆80Updated 4 months ago