Pangenome graphs (review article on graph-based pangenomic methods)
☆73Apr 15, 2020Updated 6 years ago
Alternatives and similar repositories for graph-genomics-review
Users that are interested in graph-genomics-review are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 4 months ago
- alignment to variation graph inducer☆163Updated this week
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- Library for the Handle Graph abstraction☆25Updated this week
- A Strategy for Building and Using a Human Reference Pangenome☆71May 29, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- Optimized sequence graph implementations for graph genomics☆37Jun 30, 2026Updated 3 weeks ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ☆290Dec 29, 2025Updated 7 months ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 7 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Graphical Fragment Assembly (GFA) Format Specification☆221Aug 21, 2024Updated last year
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- ☆31Nov 25, 2019Updated 6 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆88Apr 1, 2019Updated 7 years ago
- ☆15Mar 9, 2018Updated 8 years ago
- Parallel Sequence to Graph Alignment☆35Nov 26, 2022Updated 3 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆49Jun 7, 2023Updated 3 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56May 29, 2024Updated 2 years ago
- displays multiple genomic sequences in the form of a tube map☆226Nov 12, 2025Updated 8 months ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- Sequence-to-graph mapper and graph generator☆483Aug 11, 2025Updated 11 months ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- AStarix: Fast and Optimal Sequence-to-Graph Aligner☆74Dec 25, 2021Updated 4 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆63Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆26Aug 10, 2021Updated 4 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆143Jun 26, 2026Updated last month
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 7 years ago
- A fast approximate aligner for long DNA sequences☆289Oct 11, 2024Updated last year
- A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers☆23Nov 22, 2019Updated 6 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- ☆21Nov 1, 2019Updated 6 years ago