Grice-Lab / AlignerBoostLinks
AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework
☆11Updated 3 years ago
Alternatives and similar repositories for AlignerBoost
Users that are interested in AlignerBoost are comparing it to the libraries listed below
Sorting:
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- ☆11Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- reference free variant assembly☆34Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- ☆31Updated 3 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 7 months ago