Grice-Lab / AlignerBoost
AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework
☆11Updated 2 years ago
Related projects: ⓘ
- Hidden Markov Model based Copy number caller☆20Updated 11 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Detects human contamination in bam files☆16Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆23Updated 8 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- ☆9Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 3 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆16Updated 4 years ago
- Read nanopore sequence reads in real-time☆13Updated 7 years ago
- ☆12Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- ☆11Updated last year
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 6 years ago
- ☆12Updated last month
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 8 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆12Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Hemang Parikh☆11Updated 8 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 5 years ago
- Split a BAM file by haplotype support☆16Updated 6 years ago
- Prioritize structural variants based on CADD scores