Grice-Lab / AlignerBoost
AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework
☆11Updated 3 years ago
Alternatives and similar repositories for AlignerBoost
Users that are interested in AlignerBoost are comparing it to the libraries listed below
Sorting:
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Specific Transposable Element Aligner (HERV-K)☆16Updated 5 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆12Updated 4 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- ☆11Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Unfazed by genomic variant phasing☆26Updated 11 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆20Updated 6 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 11 months ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- v2.x of the microassembly based somatic variant caller☆21Updated 2 weeks ago