alejandrogzi / gtfsortLinks
a lexicographically-based GTF/GFF sorter
☆36Updated 4 months ago
Alternatives and similar repositories for gtfsort
Users that are interested in gtfsort are comparing it to the libraries listed below
Sorting:
- ☆23Updated 4 months ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆29Updated 2 years ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆42Updated last month
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Easy genomic regions for short-read variant calling☆36Updated 2 weeks ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 10 months ago
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- long read RNA-seq quantification☆88Updated this week
- Joint structural variant and copy number variant caller for HiFi sequencing data☆59Updated this week
- ☆23Updated 8 months ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- ☆32Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week