a lexicographically-based GTF/GFF sorter
☆39Jul 21, 2026Updated last week
Alternatives and similar repositories for gtfsort
Users that are interested in gtfsort are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- fastest GTF/GFF-to-BED converter chilling around☆32Jun 16, 2026Updated last month
- high-performance BED-to-GTF converter written in Rust☆21Jun 24, 2026Updated last month
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- 2bit file format implementation in Rust☆16Mar 27, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- ☆21Dec 26, 2025Updated 7 months ago
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 10 months ago
- ☆15May 22, 2026Updated 2 months ago
- A high-performance BigWig and BigBed library in Rust☆118Jul 6, 2026Updated 3 weeks ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 8 months ago
- ☆21Apr 20, 2026Updated 3 months ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆102May 29, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Rust implementation of the Haskell Rampart library that determines how intervals relate to each other.☆11Apr 21, 2022Updated 4 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 4 years ago
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆44Dec 18, 2025Updated 7 months ago
- plane sweep filtering genome alignments☆24Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Dec 1, 2021Updated 4 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- A very fast interval tree data structure☆134Feb 3, 2025Updated last year
- ☆18Jul 21, 2026Updated last week
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Creating alignment plots from bam files☆132Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Jul 19, 2023Updated 3 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆22Updated this week
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- ☆17Jan 6, 2023Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆39Mar 5, 2023Updated 3 years ago