alejandrogzi / gtfsort
a lexicographically-based GTF/GFF sorter
☆33Updated 8 months ago
Alternatives and similar repositories for gtfsort:
Users that are interested in gtfsort are comparing it to the libraries listed below
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 weeks ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- Kmer Analysis of Pileups for Genotyping☆29Updated last week
- Easy genomic regions for short-read variant calling☆13Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last week
- A long-read analysis toolbox for cancer and population genomics☆22Updated 2 months ago
- Automated Detection and Qualification of Differential Methylation☆12Updated last year
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- ☆16Updated this week
- crab go snap snap☆38Updated this week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated last month
- ☆22Updated 4 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆17Updated 3 weeks ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- ☆18Updated 2 years ago
- LongcallR is a small variant caller for single molecule long-read RNA-seq data☆49Updated this week
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 4 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- ☆17Updated last year
- ☆39Updated 7 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 weeks ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago