A tool to detect structural variant
☆17Mar 27, 2023Updated 3 years ago
Alternatives and similar repositories for SENSV
Users that are interested in SENSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VarIant SimulatOR for short, long and linked reads☆53Oct 21, 2024Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated last year
- ☆16Jan 15, 2025Updated last year
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Structural variant caller for low-depth long-read sequencing data☆48Feb 5, 2026Updated last month
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 7 months ago
- Structural Variants Pipeline for Long Reads☆44Jul 17, 2018Updated 7 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated 3 weeks ago
- Long read based human genomic structural variation detection with cuteSV☆281Updated this week
- Deep Variant as a Nextflow pipeline☆30Jul 24, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated 11 months ago
- Support Vector Structural Variation Genotyper☆58May 29, 2020Updated 5 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- SV detection tool for nanopore sequence reads☆97Updated this week
- ☆19Nov 22, 2022Updated 3 years ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆28Aug 21, 2025Updated 7 months ago
- A local-haplotagging-based small and structural variant caller☆100Mar 23, 2026Updated last week
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago
- Structural variant caller for real-time long-read sequencing data☆61Dec 1, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆71Updated this week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Sep 2, 2025Updated 6 months ago
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated last year
- ☆125Feb 22, 2026Updated last month
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Analyzes whole genome sequencing data for gene-editing verification☆10Feb 6, 2026Updated last month
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- SV caller for nanopore data☆92Jun 7, 2020Updated 5 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Nov 28, 2025Updated 4 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year