HKU-BAL / SENSVLinks
A tool to detect structural variant
☆18Updated 2 years ago
Alternatives and similar repositories for SENSV
Users that are interested in SENSV are comparing it to the libraries listed below
Sorting:
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 5 months ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated 7 months ago
- ☆32Updated 2 years ago
- ☆48Updated last year
- Human pan-genome analysis pipeline☆30Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆30Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last week
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Variant annotation and merging pipeline☆39Updated last month
- Linear-time de novo Long Read Assembler☆41Updated 7 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated this week
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Updated last year
- VNTR annotation using motif selection☆36Updated last week
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago