HKU-BAL / SENSVLinks
A tool to detect structural variant
☆18Updated 2 years ago
Alternatives and similar repositories for SENSV
Users that are interested in SENSV are comparing it to the libraries listed below
Sorting:
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- ☆33Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated 2 weeks ago
- ☆48Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 6 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆42Updated last month
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆31Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆19Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆19Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated this week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- VNTR annotation using motif selection☆36Updated last week
- heuristics to merge structural variant calls in VCF format.☆38Updated 8 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 6 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆16Updated 7 years ago
- Variant annotation and merging pipeline☆39Updated last month
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 2 years ago
- Linear-time de novo Long Read Assembler☆41Updated 7 months ago
- SV genotyping with long reads☆39Updated 2 years ago
- An insertion caller for Illumina paired-end WGS data.☆23Updated 3 weeks ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆23Updated 5 months ago