Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences
☆18Jan 19, 2023Updated 3 years ago
Alternatives and similar repositories for geneid
Users that are interested in geneid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)☆12Aug 6, 2023Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆17Updated this week
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 7 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆23May 16, 2026Updated 3 weeks ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- Next generation sequence parameter library for proteins☆41Updated this week
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 4 months ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Jun 3, 2026Updated last week
- Unzip assembly graphs with Hi-C data and/or long reads.☆28May 7, 2026Updated last month
- ☆13Nov 15, 2017Updated 8 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- ☆21Sep 8, 2023Updated 2 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Master of Pores 2☆23Dec 4, 2024Updated last year
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TD2☆41May 17, 2026Updated 3 weeks ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆69Aug 16, 2023Updated 2 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆29Mar 19, 2021Updated 5 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 3 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆40Mar 14, 2023Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species r…☆24Jun 14, 2024Updated 2 years ago
- ORFFinder in Python☆14Aug 24, 2024Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆34Aug 18, 2025Updated 9 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63May 5, 2026Updated last month