Reference bias measuring toolkit
☆20Mar 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for biastools
Users that are interested in biastools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆13Sep 5, 2025Updated 6 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated last month
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated last year
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated 2 months ago
- alignment to variation graph inducer☆158Mar 6, 2026Updated 2 weeks ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 6 months ago
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- ☆13Aug 18, 2023Updated 2 years ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆34Nov 14, 2024Updated last year
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆18Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆129Updated this week
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆25Feb 9, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- ☆15Apr 2, 2024Updated last year
- Identification of transposable element families from pangenome polymorphisms☆56Jun 3, 2025Updated 9 months ago
- ☆45Dec 11, 2025Updated 3 months ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆15Jan 30, 2026Updated last month
- A local-haplotagging-based small and structural variant caller☆96Mar 11, 2026Updated 2 weeks ago
- ☆11Dec 9, 2022Updated 3 years ago
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆15Sep 5, 2024Updated last year
- ☆44May 8, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 6 months ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- ☆27Nov 14, 2025Updated 4 months ago
- Repository☆10Oct 23, 2024Updated last year
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 2 years ago
- Show pangenome graphs in an easy way☆59Aug 7, 2025Updated 7 months ago
- ☆10Dec 28, 2023Updated 2 years ago