Reference bias measuring toolkit
☆22Mar 12, 2026Updated 6 months ago
Alternatives and similar repositories for biastools
Users that are interested in biastools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆14Sep 5, 2025Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 7 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Identification of transposable element families from pangenome polymorphisms☆57Aug 11, 2026Updated last month
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 7 months ago
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated 2 months ago
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- The MafFilter genome alignment processor☆19Aug 27, 2026Updated 3 weeks ago
- AlfaPang builds pangenome graphs without alignments or references.☆17Nov 7, 2025Updated 10 months ago
- alignment to variation graph inducer☆165Jul 29, 2026Updated last month
- Fast and flexible inference of the distribution of fitness effects (DFE).☆16Updated this week
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- ☆13Aug 18, 2023Updated 3 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆52Sep 22, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 2 months ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆35Nov 14, 2024Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 10 months ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆16Jan 29, 2024Updated 2 years ago
- ☆16Apr 2, 2024Updated 2 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Apr 26, 2023Updated 3 years ago
- Show pangenome graphs in an easy way☆61Aug 7, 2025Updated last year
- a python package for finding tandem repeats from genomic sequences☆39Jun 11, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Dec 9, 2022Updated 3 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆137Updated this week
- ☆15May 3, 2023Updated 3 years ago
- ☆45May 8, 2024Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated last month
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- Repository☆10Oct 23, 2024Updated last year