Minimap2onGPU / mm2-gb
A versatile pairwise aligner for genomic and spliced nucleotide sequences
☆18Updated last month
Related projects ⓘ
Alternatives and complementary repositories for mm2-gb
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated 5 months ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆12Updated last year
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆28Updated last month
- An Fast variant calling tool to detection germline and somatic variants☆10Updated last year
- ☆12Updated 5 years ago
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- ☆26Updated 3 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 5 months ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆42Updated last year
- Tumour-only somatic mutation calling using long reads☆24Updated 3 weeks ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated last month
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- ☆27Updated 10 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆68Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- De novo construction of isoforms from long-read data☆16Updated this week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated last month
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated this week
- ☆29Updated 2 years ago
- Convert HAL to VG☆21Updated 3 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated last year
- A streaming method for mapping nanopore raw signals☆31Updated 3 years ago