Minimap2onGPU / mm2-gb
A versatile pairwise aligner for genomic and spliced nucleotide sequences
☆19Updated 2 months ago
Alternatives and similar repositories for mm2-gb:
Users that are interested in mm2-gb are comparing it to the libraries listed below
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆27Updated 10 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆37Updated last year
- De Bruijn graph construction for large k.☆18Updated 3 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- An Fast variant calling tool to detection germline and somatic variants☆10Updated last year
- ☆28Updated 7 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆17Updated last year
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆12Updated 2 years ago
- ☆14Updated 11 months ago
- ☆12Updated 6 years ago
- ☆22Updated 7 months ago
- Tumour-only somatic mutation calling using long reads☆26Updated 4 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆26Updated 3 months ago
- Wavefront alignment algorithm (WFA) in Golang☆30Updated 4 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 4 months ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆32Updated 6 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated 2 weeks ago
- 🔎 wheeler graph recognition algorithm, visualization and generation☆16Updated last year
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆14Updated 9 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 10 months ago
- CAncer Standards Long-read Evaluation☆23Updated last month
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Updated 2 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated 9 months ago
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- ☆15Updated last month
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- ☆16Updated 3 years ago
- Tandem repeat genotyping with long reads☆28Updated last month
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago