Minimap2onGPU / mm2-gbLinks
A versatile pairwise aligner for genomic and spliced nucleotide sequences
☆23Updated 5 months ago
Alternatives and similar repositories for mm2-gb
Users that are interested in mm2-gb are comparing it to the libraries listed below
Sorting:
- An Fast variant calling tool to detection germline and somatic variants☆11Updated last week
- De Bruijn graph construction for large k.☆17Updated 4 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- A more efficient quality control tool for sequencing data☆33Updated 8 months ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆39Updated 9 months ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- A tool for sniffing out the differences in vari-Ants☆38Updated 2 weeks ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆25Updated 9 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- GBWT-based handle graph☆31Updated this week
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆28Updated 9 months ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆13Updated 2 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- ☆16Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- ☆22Updated 3 weeks ago
- AlfaPang builds pangenome graphs without alignments or references.☆15Updated 3 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆29Updated last month
- GFA visualizer, GPU-accelerated using Vulkan☆75Updated 3 years ago
- PGR-TK: Pangenome Research Tool Kit☆21Updated 11 months ago
- ☆31Updated 9 months ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 10 months ago
- ☆19Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- ☆17Updated 5 years ago
- A streaming method for mapping nanopore raw signals☆32Updated 4 years ago