lh3 / unicallLinks
A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
☆14Updated 6 years ago
Alternatives and similar repositories for unicall
Users that are interested in unicall are comparing it to the libraries listed below
Sorting:
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆14Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- ☆13Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- ☆16Updated 7 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆12Updated last week
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- ☆12Updated 3 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Unfazed by genomic variant phasing☆27Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- ☆12Updated 4 months ago